Vigna umbellata (ricebean): 124834483
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Entry
124834483 CDS
T09662
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124834483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vum03021
]
124834483
03019 Messenger RNA biogenesis [BR:
vum03019
]
124834483
Transcription machinery [BR:
vum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124834483
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
124834483
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
124834483
NCBI-ProteinID:
XP_047165139
LinkDB
All DBs
Position
Unknown
AA seq
971 aa
AA seq
DB search
MENSRRPFDRSREPGPKKPRLMEELDRAPNSGARQFPQLQVISGVSTLPSARFRTTERDV
ESNDFGRRGGAGGGGYQPQPLPFQELVTQYKAALAELTFNSKPIITNLTIIAGENQAAEK
AIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVH
QSMRHLFGTWKGVFPPQTLQIIEKELGFTSAVNGSSASSTLRSDSQSQRPPHSIHVNPKY
LERQRLQQSSRTKGVDDMTGAISNSNDDQEMPGRTLGVLRSWVDHNVTVSVHSRENDQRA
RRDAFNDSVPEKSTGASYGSNELGSNISRNLGLGISRPGGRVTESGHDKGWYNKSGVVAG
TMPGQRNGLSNKYSFSSTEASKSMVLDAHHQPAHNITSTQSSVISNSWKNSEEEEYTWDE
MNSGLTGHSTSIVSSLSKDTWTADDENLEVEDRIQVKNPFVVNADREIVIESQANEKKQF
PASQHHSSLSWQLQEQHSINELNRKAGHSSRFVSALGAIPSNTNASTARMGSRPFLSSAT
IGLPGIAGPFHSLGAENPSGQSPLQRRSPSPPGPFSSMTFQARHQQQLGTSLEVTVKTEK
PPVSKVPLVRETKSSMSTGNLPTRLGVRPSRTGGPSPATLISSLSTSALPSSLGPSGDNS
SALSKMPQRKAGQPPRLSTLPSTASNVSSASAQTSDTNHNLNPIANLLSSLVAKGLISAE
TESTSKEPSELLTRLEEESDSITTGNSLPVASISGSAAVPVPSIKDEVDDTARTPISLSE
STSPGVVNVIGFEFKHDVLREFHSSVISGLFDDLPHHCSICGFRLRFQKQFNRHLEWHAT
RDREENGLTKAVRWYLKSSDWIVGKAEYVSENDADSVDTYGNEADRSQEDAMVVADENQC
LCVLCGELFEDFYCEESGEWMFKGAVYFANSNSNSEMGTGDMSTGRGPIIHANCLSDNLI
SSVHEMVRLIT
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggagaactcgcgtagaccgttcgatagatcgcgagagcctggaccgaagaagcccaga
ttgatggaagagctggatcgggctccgaattctggtgcgagacagtttcctcaactacaa
gtgatttctggggtttcgacgttaccgtctgcaaggtttagaacaaccgaaagagacgtt
gaaagcaatgattttggtcgccggggtggtgctggaggtggcggttatcagccccagcca
ctgccatttcaggagcttgttactcagtataaggcagctcttgcagaacttactttcaac
tcgaaaccgataattaccaacttgactatcattgcaggggagaaccaagctgcagagaag
gccattgcagcaactgtttgtgctaacattttagaggttcctagtgatcaaaagctgcca
tcactttatctcttagacagtattgttaagaatattgggcgggattatataaaatacttc
gctgccaggctacctgaggtattctgcaaagcatacagacaggttgatccttctgtccat
caaagtatgaggcatctttttggaacttggaaaggagtctttcctcctcagacccttcag
attattgagaaagaactgggcttcacttctgcagtcaatggctcgtctgcttcttctact
ctcaggagtgattcacagtcacaacgtccacctcatagtattcatgttaatcccaagtat
ttagaaagacaacgtctacagcagtccagcaggactaaaggagttgatgatatgactgga
gcaatttcaaactcaaatgatgaccaagagatgcctggtagaactttaggtgttttacga
tcatgggtggatcataatgttactgttagcgtccattcacgtgaaaatgatcaacgtgct
cgaagagatgcattcaatgattctgttccagaaaagagcactggtgcatcctatggaagc
aatgaacttggttccaatatttcaaggaatttaggcttgggtatcagccgacctggtggt
agggtgaccgagtcaggacatgacaaaggttggtacaacaaatctggtgttgttgcaggg
accatgcctgggcaaagaaatggtttgagtaacaagtatagtttttcaagtactgaagca
tcaaagtccatggttttggatgcacatcatcaaccggcacataatataactagcacacag
agcagtgtgatctcaaatagctggaaaaattccgaggaagaggagtacacatgggatgag
atgaactctggcttgactggtcacagtacatctattgttagcagcttgagcaaagatact
tggactgctgatgatgagaatttggaagttgaagatcgcatccaagtcaaaaatcctttt
gtggtaaatgctgatagagaaatagttattgaatctcaagccaatgaaaagaaacaattt
cctgcatctcaacatcattcatcactatcatggcaattgcaggagcagcattctattaat
gagttgaatcgaaaagctggtcactccagcagatttgtgtccgcacttggtgccataccg
tccaatacaaatgcctctactgccagaatggggagtcggccattcctttcaagtgcaacc
ataggattgccaggaattgcaggaccctttcattctttgggagctgaaaacccttcaggg
cagtcacctttgcagcggaggtctccatcaccaccaggtccattctcttcaatgactttt
caggcaaggcatcagcagcaattgggcacttctcttgaggttactgttaagactgagaag
ccacctgtgtccaaggttcctttagtcagagaaactaaaagtagcatgagtacagggaat
cttccaactcgattaggtgttcggccttcacgaacaggtggtccttcccctgccacatta
atttcttcattgtccactagtgcattaccatcttcattaggtccttctggtgataattca
tctgctctctcaaaaatgcctcaaagaaaggctggacaaccacctaggttatctactcta
ccatctactgcctctaatgtcagcagtgcctctgcccagacaagtgataccaatcataac
ttgaatccaattgccaaccttttaagctctttagttgcaaaaggcttgatatctgcagaa
acagaatcaacatctaaggagccctctgagttgctgactcgactggaagaagaaagcgat
agcattaccaccggtaactctttacctgtggcctcaatttctggttctgcagctgtacca
gtcccttcaatcaaagatgaggttgatgacactgcaagaacgcccatatccttgtctgaa
tcaaccagtccaggagtagtaaatgtcattggctttgagtttaagcatgatgtattacga
gaattccattcatctgtaattagtggattatttgatgatcttccacatcattgcagcatt
tgtggctttagacttagattccaaaaacagttcaatagacacttggagtggcatgccaca
agggatagagaagagaatggtttaactaaggcagtgagatggtatcttaagtcaagtgac
tggattgttggcaaggctgaatatgtatcagagaatgatgctgattctgtagatacttat
ggcaatgaagcagacagaagtcaagaggatgctatggttgtagcagatgaaaaccaatgc
ttgtgtgtgttgtgcggtgagctatttgaagatttttactgtgaggaaagtggggaatgg
atgttcaaaggagctgtttactttgctaactctaatagcaacagtgagatgggaactgga
gatatgagtactggaaggggtcccatcattcatgcaaattgcttatcagataacttgatt
tcaagtgtccatgagatggtaagacttattacttga
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