Vigna umbellata (ricebean): 124834697
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Entry
124834697 CDS
T09662
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124834697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124834697
03012 Translation factors [BR:
vum03012
]
124834697
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124834697
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124834697
Translation factors [BR:
vum03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124834697
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
AAA_22
nSTAND3
ATPase
AAA_11
PhoH
Rad17
ResIII
NPHP3_N
T2SSE
ABC_tran
NACHT
Motif
Other DBs
NCBI-GeneID:
124834697
NCBI-ProteinID:
XP_047165412
LinkDB
All DBs
Position
Unknown
AA seq
612 aa
AA seq
DB search
MSPRIPFLAMDSSLPLHVDGADKGFNCDAEKGNSSSAFPSEDWKQKLNMLLNDQSKQELV
SREKKDRRDFQQIETLASKMGLYSHMYAKVVVVSKAPLPNYRYDLDDKRRLREVNLPTTL
LRQVDGYLQEYLTQKSRRKENFSNLWCATPADSGGTDEGLFEPPKSLSCSRAVVDKFLCQ
RSSQMRDQQRTWQESPDGRKILEFRSSLPAYKEKEAILSAISRNQVLIISGETGCGKTTQ
VPQFILESEIELVRGAVCNIICTQPRRIAAISVSERVAFERGEKLGETVGYKVRLEVMQG
RDTHLLFCTTGILLRRLLDDKKLKGITHIIVDEFHERGINEDFLLVVLKDLLAFRPELKL
ILMSATLDAELFSSYFNNASTMKIPGFTYPVRTQFLEDILEISGYRLTPDNQIDDYGPER
IWKMNKQLPGKRKSQLSSALEDVLRAADFNYYSPQTSESLSCWNPDFIGFNLIQYILCNI
CEHERPGAILVFMIGWDDINALKEKLLTHPVLSDPNRVLLVMCHGSMDSLEQRLIFQEPE
DGVRKIVLATNIAETSITINDIVFVIDCGKAKESSYDALNNTCCLLPTWISKVSVQQVRL
YYYVVIVSNDCF
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtcccctcgcattccatttctcgccatggattcttctcttccccttcatgttgacggt
gctgacaaaggttttaattgcgatgctgagaaagggaattcttcgagtgctttccccagc
gaggactggaagcagaaattaaacatgcttttgaatgatcagagtaagcaagagttggtc
tcaagggagaaaaaggatcggcgtgattttcagcaaatagagactttggcgagcaaaatg
gggttgtatagccatatgtatgcgaaggtggttgttgtcagcaaagcccctcttccaaac
tacagatatgatttggacgataaacgccgccttagggaggtgaacctacctactactctg
ttaaggcaagttgatggatatcttcaagaatacctaacccaaaagtcaagaaggaaggaa
aacttttccaatttgtggtgtgcaacaccagccgacagcggtggtacagatgaagggctt
tttgagccacctaagtcactatcatgcagcagggctgtagtggataaatttctttgtcag
agaagttcacaaatgcgtgatcagcaaagaacttggcaggaatctccagatggaagaaag
attctggaatttcgtagcagtctacctgcttataaagagaaggaagcaatattatcagcc
atatcaaggaatcaggtacttatcatttcgggtgaaacaggttgtggaaagacaacacaa
gttccacaatttatcctagaatctgagatagaattagttcgtggagctgtgtgtaatatc
atttgcacacaaccaagacgcattgcagcaatttctgtttctgaaagagttgcctttgaa
agaggagagaaattgggtgaaactgttggatataaagttagacttgaagtcatgcaaggg
agagatacccatcttctcttctgcaccacaggcatcttattaagaagattactagatgat
aaaaaattaaaaggcataactcatattattgttgatgaatttcatgagcggggaattaat
gaagattttttgcttgttgttcttaaagatcttctagctttcaggccagaactgaaactg
attttaatgagtgctacccttgacgctgagctcttctcttcatattttaataatgcttca
actatgaagattccgggttttacctatcctgtcagaactcaatttttggaggatattttg
gaaatctcgggctacagattgactcctgacaatcaaattgatgactatggtccagaaagg
atttggaaaatgaacaaacagttgccaggaaagaggaaaagccaattatcttctgctttg
gaggatgtgttaagagctgctgatttcaattattacagtccgcaaacaagtgagtctttg
tcttgttggaatcctgactttattggttttaacctcatacaatatatactgtgcaatata
tgtgagcatgaaagaccaggtgccattttagttttcatgattggatgggatgatataaat
gctctgaaggagaagctcctaacacatcctgtcttgagtgatccaaaccgagttttgttg
gtgatgtgccatggctcaatggacagtttggagcagaggttaatctttcaagaacctgaa
gatggagtacggaaaatagtgctagcaacaaatattgctgaaacgagtatcacaatcaat
gatattgtttttgttatcgactgtgggaaggcaaaagaatcatcatatgatgcattgaat
aacacatgttgtttgcttcctacttggatttctaaggtttcagttcaacaagtaagatta
tattattatgttgtcattgtcagtaatgattgtttctaa
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