KEGG   Vigna umbellata (ricebean): 124834747
Entry
124834747         CDS       T09662                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
vum  Vigna umbellata (ricebean)
Pathway
vum03018  RNA degradation
vum03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124834747
  09123 Folding, sorting and degradation
   03018 RNA degradation
    124834747
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vum03019]
    124834747
   03041 Spliceosome [BR:vum03041]
    124834747
Messenger RNA biogenesis [BR:vum03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     124834747
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     124834747
Spliceosome [BR:vum03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    124834747
SSDB
Motif
Pfam: LSM DUF7452 Ntox4
Other DBs
NCBI-GeneID: 124834747
NCBI-ProteinID: XP_047165477
LinkDB
Position
Unknown
AA seq 87 aa
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGR
RITKLDQILLNGNNIAILVPGGSPESE
NT seq 264 nt   +upstreamnt  +downstreamnt
atggccaataatccgtcacagcttctcccatctgagttgattgatcggtgtataggatcg
aaaatttgggtgataatgaagggtgacaaggagcttgttggtactcttagaggctttgat
gtttatgtcaacatggtacttgaagatgttactgaatacgagatcacgtctgaagggaga
cggataaccaagcttgatcagattttactcaatggaaacaacattgccatattggtccct
ggtggttcacctgagtctgaatga

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