Vigna umbellata (ricebean): 124835031
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Entry
124835031 CDS
T09662
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124835031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124835031
Enzymes [BR:
vum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
124835031
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
124835031
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
ABC_tran
SRPRB
AAA_22
AAA_29
ATP_bind_1
FtsK_SpoIIIE
DUF1611
Motif
Other DBs
NCBI-GeneID:
124835031
NCBI-ProteinID:
XP_047165840
LinkDB
All DBs
Position
Unknown
AA seq
438 aa
AA seq
DB search
MAYGGAGPVGGSGSASTIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIW
LNFPPRLKFAVFTWFGATIEMDGATETDYTADETPMVSYVNVHAILDGRRSRAKASSPDD
FEFSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPI
EMPIDPVEGIPLEMPLVYFYGHATPSNNVELYKVLVKELSGMIERQFTGNAESRASGMVI
NTMGWIEGVGYDLLLHAIRTFKANVVLVLGQEKLCSMLKDVLKSEPKVDVVKLQRSGGVV
SRNAKVRQKARSYRIREYFYGLSNDLSPHSNIANFSDLFVYRVGGGPQAPRSALPIGAEP
AADPTRVVPVNINRDLLHLVLAVSFAKEPDEIISSNVAGFIYVTDIDIQRKKITYLAPSS
GELPSKYLIMGSLTWLET
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcttacggtggtgcaggtcctgtgggtggttcgggatctgcatccaccattaagcaa
gtgaaattggagagagaaagcgaactcagaatagaagtgggtaacgacgcaccacttcgc
cttcgtctccttaacggaactgctgaaattttcggcaccgagcttcctcccgaaatctgg
ctcaatttccctcccagactcaagttcgctgtgtttacttggtttggtgcgaccattgaa
atggacggagctactgaaactgattacactgccgatgagactcccatggtaagctatgta
aatgtgcatgccatactggatggaagaagaagtcgtgccaaagcttcatcacctgatgat
tttgaattttctcagggtcctagggtcattgttgtagggcctactgattctggaaagagt
accttgtccaggatgcttcttagttgggcggctaaacaaggttggaaacctacctttgtt
gacttggatattggccaaggctctataacaattcctggatgcattgctgccactccaatt
gaaatgcccattgatcctgtggaaggtattccacttgaaatgcctcttgtatacttttac
gggcatgcaactccaagcaacaacgtagaattgtataaagtgcttgtcaaggagctttca
gggatgattgagagacaatttactggaaatgctgaatctcgagcttcgggcatggtgata
aatactatgggatggatagaaggagtaggctatgatttgctcttgcatgcaattcgtaca
ttcaaggccaatgttgtcttggttttaggtcaggaaaaattgtgcagcatgctcaaagat
gtgcttaagagtgagcccaaagtagatgttgtgaaacttcagaggtcaggtggagttgta
tctaggaatgcaaaagtcagacagaaggccagaagttacaggataagggaatacttctat
ggcctttcaaatgatctttctccacattctaatattgcaaattttagtgatttgtttgtt
tatcgagttggtggtgggccacaggccccacggtcagccttgccaattggagcggaacct
gctgcagatccaacaagagttgtacctgtaaacataaatcgtgatttgctccatcttgtc
cttgctgtctcatttgccaaggaacctgatgagatcatttccagcaatgttgccgggttc
atttatgtaacagacattgatattcagagaaagaagataacataccttgctccgtcttct
ggagagcttccaagcaagtatttgataatgggatccttgacatggcttgaaacatga
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