Vigna umbellata (ricebean): 124835424
Help
Entry
124835424 CDS
T09662
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124835424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vum03021
]
124835424
03036 Chromosome and associated proteins [BR:
vum03036
]
124835424
Transcription machinery [BR:
vum03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124835424
Coactivators
SAGA/TFTC/STAGA complex
124835424
Chromosome and associated proteins [BR:
vum03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
124835424
STAGA complex
124835424
TFTC complex
124835424
SAGA complex
124835424
SLIK complex
124835424
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_IFT122_1st
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
TFIID_NTD2
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Gbeta
EIF3I
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
DSE1_N
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_VPS8
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
CFAP251_N
PAC11
Beta-prop_WDR41
Beta-prop_NOL10_N
ASA1
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Ge1_WD40
Beta-prop_Vps41
WD40_RFWD3
Tricorn_2nd
Beta-prop_Nup120_160
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
PALB2_WD40
Nbas_N
SHKBP1_KCTD3_C
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
124835424
NCBI-ProteinID:
XP_047166304
LinkDB
All DBs
Position
Unknown
AA seq
659 aa
AA seq
DB search
MDEDQIEGCVSGYLKQKGFAQNDDQLQLSKANSSLQPDTLNRSQLERGSARYHDGYGRLR
SWAYRSLESYKHELLRVLYPVFVHCFMDLVAKGHLQEAWNFFNTFREDHEMLHSRDLQKL
ELVLSPTHLEEMEFAHSLRQSKFNIKICRYSYELLLQHLHSMQSTTIIGIINEHISFQVT
AGQPSSISDDPEAVTLSGSIQDAVNQINQKEILWGMFEDSVEDHIDKAGALLSGTEKGEG
EGKEGDNDESKKRSIDVGKQGNSVKKVKKDKVSSATGKNAKPEANTISAAPRIKPEIPLP
TVSTDVELSILDDLRNRVQLSSVALPSVNFYTFVNTHNGLSCSSISHDGSLIVGGFSDSS
LKVWDMAKLEQQSTAHFSQGGNDMSQNEQIIGQNSGRRQYTLYQGHSGPVYAATFSAAGD
FLLSSSADKTVRLWSTKLNANLVCYKGHNYPIWDVQFSPAGHYFASCSHDRTARIWSMDR
TKPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQSGECVRVFIGHRSMILSLA
MSPDGRYMASGDEDGTIMMWDLSSGCCVTPLVSHTSCVWSLAFSCEGSLLASGSADCTVK
FWDVTTGIKVPRNEENRSGNANRLRSLKSLPTKSASVYSLQFSRRNLLFAAGAVAKSGC
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagatcaaatagaaggttgtgtgagtgggtacctaaagcagaaagggtttgcg
caaaacgatgaccaacttcaactttccaaagccaattcctctcttcaacccgacactctc
aatcgctctcaattggagagaggttctgctagataccacgacgggtatggcagactgaga
tcatgggcatataggtcacttgaatcatacaagcatgaattactgcgtgtgctttatcca
gtatttgtccattgcttcatggatcttgtggcaaaagggcatcttcaggaagcttggaac
tttttcaatacctttcgtgaggaccatgaaatgttgcactcacgagaccttcagaaattg
gaactagttctttctcctactcatttggaggaaatggaattcgctcattcccttaggcag
agtaagttcaacataaagatatgtcggtattcctatgagcttctattgcaacatctacat
agtatgcaatccaccacaataattggtattatcaatgagcatattagcttccaagttaca
gctgggcaaccgagctcaatttctgatgacccagaagctgttaccctcagtggaagcatc
caggatgcagtaaaccagataaatcagaaagaaatcctttgggggatgtttgaagattct
gtggaagaccacatagataaggctggggccttgctttcaggcacagaaaagggtgaaggc
gaaggcaaagagggagacaatgatgagagtaagaaaaggtcaattgatgtaggaaagcaa
ggtaattcagtaaaaaaggtaaaaaaggacaaggtcagcagtgcaacagggaaaaatgct
aagccagaagctaacactatatctgcagcacctcgcattaaaccagagatacccttgccc
acagtttcaactgatgtagaactgtctatcctagacgatttaaggaatcgtgtacaattg
agtagtgttgctctcccttcagtgaacttctacacatttgtaaatacacataatggttta
agctgttcatcaatatcccacgatgggtcattgattgttggaggattttctgactcttcc
ctaaaggtctgggatatggcaaaacttgagcaacaatccactgctcatttttcgcaggga
gggaatgacatgtcacagaatgaacaaattattgggcaaaatagtgggagaagacagtat
acattgtatcaaggtcactcaggtccagtctatgccgccacttttagtgctgccggggat
tttcttctttcctcttcagcagacaaaacagttcgactatggagtacaaagcttaatgcc
aatcttgtttgttacaagggtcacaattaccctatctgggatgttcagtttagtcctgca
gggcattattttgccagctgttcacatgacagaactgccaggatttggtctatggacaga
acaaaacctttaagaataatggcaggacatttgtccgacgttgattgtgtgcagtggcat
cccaactgcaactacattgctactggctccagtgataaaacagttcgactgtgggatgta
cagagcggggaatgtgttcgggttttcattggtcatagaagtatgattttgtctttggca
atgtcccctgatggtcgctacatggcatctggtgatgaagatggcacaatcatgatgtgg
gacctctctagtggctgttgtgtcacacctcttgtcagtcacacttcatgtgtctggtca
ctcgctttcagttgtgaaggttctcttctagcatctggatctgctgattgcacagtcaaa
ttttgggatgtaactacgggtataaaggttccaaggaatgaagaaaatagaagtgggaat
gctaacagactcagatcattaaaaagcctgccaaccaaatctgcttcagtttactctctc
cagttttctcgcaggaatcttctttttgcagcaggagctgttgcaaaaagtggttgttag
DBGET
integrated database retrieval system
