Vigna umbellata (ricebean): 124835571
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Entry
124835571 CDS
T09662
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03013
Nucleocytoplasmic transport
vum03015
mRNA surveillance pathway
vum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124835571
09122 Translation
03013 Nucleocytoplasmic transport
124835571
03015 mRNA surveillance pathway
124835571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124835571
03041 Spliceosome [BR:
vum03041
]
124835571
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124835571
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124835571
Spliceosome [BR:
vum03041
]
Complex C
Other components
EJC/TREX
124835571
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124835571
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
124835571
NCBI-ProteinID:
XP_047166482
LinkDB
All DBs
Position
Unknown
AA seq
478 aa
AA seq
DB search
MGRAFRTIHGSTRYIFSSLLNSLLLFLKPRTRSRVYFQSPPQQLFPLRLRRIRMGELKDT
EAYEEELLDYEEEDEKAPDSAKPAESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHP
SEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTRELAYQ
ICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALARDKDLGLK
NVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPME
IYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLV
ECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSA
DTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTSTYMPN
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgggaagggcttttcggactattcacggtagcacacgctatatcttctcgtccctgctc
aactcgctgttactcttcctaaaacccagaaccagatctagggtttattttcaatctcct
cctcaacaactatttccgttgcgtcttcgaagaatcaggatgggagaattgaaggacacc
gaggcttacgaggaagagctccttgattacgaagaagaagacgagaaagctcccgattct
gccaagcctgcagaatccggcaagaagggctatgttggcatccatagttcgggttttcga
gactttttgttgaagccagagcttctgcgagccattgtagattcaggatttgagcatcct
tcagaagtgcaacatgaatgcatccctcaagcaatcttaggaatggatgtcatttgtcaa
gcaaaatctgggatgggaaagactgctgtctttgttctttctacacttcagcaagttgat
cctgttcctggtcaagttgcagctctagttctttgccacacaagagaactggcttatcag
atttgccatgaatttgagagattcagcacatatcttcctgatataaaggctgctgttttc
tatggtggcgtcaatatcaaggttcacaaagaattgctcaagaatgaatgtcctcatatt
gttgttggaacacctgggaggattcttgctctggctagagataaggaccttggtttaaag
aacgtgaggcatttcatacttgatgagtgcgacaagatgcttgaatcacttgatatgaga
agagacgtccaggagattttcaaattgactcctcatgataaacaagtgatgatgttttca
gctacacttagtaaagagattcgacctgtttgcaagaaatttatgcaagatcctatggaa
atctatgtggatgatgaggccaagttgacgcttcatggtcttgtccagcactacatcaaa
ttgcaagagtcagagaagaacaggaagttgaatgatcttcttgatgctttggacttcaac
caagtagttatttttgtcaagagtgttagcagagcagcagagttgaacaagttgcttgtg
gaatgtaacttcccatccatctgcatacattctgcaatgtcacaggaagagagattgaaa
cgatacaaaggcttcaaggaagggaagcaaaggattctcgtggcaactgacttagtaggg
agggggattgacatagaacgtgttaatatagttattaattatgacatgcctgattctgcg
gatacttacttgcacagggtaggaagagcaggtagatttggcacgaaggggcttgctatt
acttttgtctcctccactgccgactctgaagttcttaatcaggtgcaatctaggtttgaa
gttgatattaaggagcttcctgaacaaattgacacttcgacatacatgccaaattga
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