Vigna umbellata (ricebean): 124836202
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Entry
124836202 CDS
T09662
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124836202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vum03041
]
124836202
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124836202
Spliceosome [BR:
vum03041
]
Complex C
Other components
Step II factors
124836202
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
AAA_16
TsaE
Sigma54_activ_2
ABC_tran
GIPC1_GH2
PhoH
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
124836202
NCBI-ProteinID:
XP_047167270
LinkDB
All DBs
Position
Unknown
AA seq
1201 aa
AA seq
DB search
MAVDNPEDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGRSSENVEEFDAKLKE
NGAEMPDYFVRTLLTIIHAILPPKPKDLKKEKETVNGKTKFKALAIADDRDRAKELRQEI
ESEAREKQSEQIEEDDGYRDRDRRDRRRDRYDEDDRRDHRRRGRDRDDEDDRRDYGRRGR
DRDRDDEDDRRDYSRRGRDKYDKDRDRDGDRYERRRRDDNEENGRGRENGDRDGNRKATR
HVSGEPELYAVYKGRVSRVMETGCFVQLEDIRGKEGLVHVSQMATRRITNAKDVIKRDQE
VYVKVISVSGQKLSLSMRDVDQHTGKDLLPLKKSSEDDALRMNPQGSRDGPVTRTGLSGI
RIVEEDDVGSSRRPLKRMSSPERWEAKQLIASGVMSVSEYPTYDEEGDGLLYQEEGAEEE
LEIELNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRT
MLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLS
IQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQ
PRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLS
QYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTI
PGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERM
KGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDP
GFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTI
PEIQRINLGMTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLG
RKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQ
PEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAG
KNFTKVRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMT
TKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRR
A
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagataatcctgaggatggattgaagaagttggaatatttgtctcttgtgtcg
aaggtgtgcaccgagttggagtcccacaccggcaccggcgacaaagttctggcggagttc
atcactgagttgggtcggtcgtcggagaatgttgaggaatttgacgcgaaattgaaggag
aatggtgcggaaatgccggattactttgtccgaacgctcctcactatcattcacgcgatt
ctccctcccaagccgaaggatttgaaaaaggagaaagagactgtcaacggcaagaccaag
ttcaaggctctggccatcgcagacgatagggaccgggccaaggagcttcggcaggagata
gaatctgaggcaagggagaagcagagtgagcaaattgaggaagatgatgggtacagagac
agagatagaagagataggcgcagagataggtatgatgaagatgatagaagagatcatcgc
agaagaggaagagacagagatgatgaagatgatagaagggattacggcagaagaggtaga
gacagagatagagacgatgaagatgatagaagggattacagccgaagaggaagagataaa
tatgataaggatagagatagggatggtgacaggtatgagaggcgcaggagagatgataat
gaagagaatggtcgtggaagggagaatggagatagagatggtaataggaaggctacacgg
catgtttctggtgaacctgaattatatgccgtttacaaagggagggtgtccagggtaatg
gaaactgggtgctttgtccagttagaagacataagagggaaggaggggttggtccatgtg
tcacagatggccactcggaggatcacaaatgccaaagacgtcattaagcgcgaccaggag
gtttatgtaaaggtgatctcagtttccggtcagaagttgtctctttccatgagggacgtt
gatcagcacacaggtaaggatctccttccgttgaagaagagctccgaggacgatgccttg
aggatgaatccgcagggttcaagggatggaccggttaccaggacaggtctttcaggtatc
aggattgtagaagaagacgatgttggttcttcacggagacctctgaagagaatgagctca
ccggagagatgggaagcaaaacagttgattgcttcaggtgtgatgagtgtttcagagtat
ccaacttatgacgaggagggagatggattgctgtaccaagaggaaggagctgaggaggag
cttgagattgagttgaatgaggatgaacccgcattcttgcaagggcagagcagatactcg
atggatatgtctcctgttaagatttttaagaatcctgaaggttctctgggtcgagctgct
gcacttcagtctgcacttataaaggagcgtagggaagtgcgagaacagcaacaacggaca
atgcttgattcaattccaaaggatctgaatcggccttgggaagaccctatgccagagtca
ggtgaaaggcatcttgcccaggagcttaggggtgttggtttatcagcctatgatatgcca
gaatggaagaaggatgcatatgggaaaacaattacctttgggcaaaggtcgaagctttct
attcaagagcagaggcagagtttgccaatttacaagttaaaaaaagaattgattcaggct
gtgcatgataatcaggtgttggttgttattggagaaactggttcgggtaagactactcag
gtcacacagtatcttgccgaagcaggttataccacaaaaggaaaaattggatgtactcaa
cctcgtagggtggctgcaatgtctgttgcaaagagagtagcagaagagtttggttgtaga
ctgggagaagaagttggttatgccattcggtttgaggattgcactggaccagatactgtt
atcaagtacatgacagatggtatgcttcttagggaaatattggtcgatgagaatctgtca
cagtattctgttataatgcttgacgaagcccatgaaagaactattcatactgatgttctt
tttggactgctcaagcagctagtgaagcgaagacccgaattgcgattgattgtcacttct
gctactctggacgctgagaaattttcaggatatttctttaactgtaacatctttacaatt
cctggtagaacttttcctgttgagatactttatactaaacagccggaaagtgattattta
gatgcatctttaataactgtcctacagatacacttgactgagcccgagggagacattctt
ctctttttgactgggcaagaggagattgattttgcttgccaatctctatacgagagaatg
aagggattaggtaagaatgttccagagctgatcattttaccggtttatagtgcccttcct
agtgaaatgcagtctaggatatttgatcctgctcctccagggaaaaggaaagtggtcgtg
gctactaacattgctgaggcttctttgactattgatgggatattttatgtaattgatcct
ggatttgctaagcaaaatgtttataacccaaagcaaggtcttgattctttggtaataact
ccaatttcacaagcatcagccaaacaaagagctggacgtgcagggcgtactggacctggg
aagtgttatcgcctttatactgagagtgcatacaggaatgagatgtctcccactacaatt
cctgagattcaaaggataaatctggggatgactacacttaatatgaaagcaatggggata
aatgatctactgtcctttgattttatggatccaccatcacctcaagcactgatttctgcc
atggagcagctttacagtcttggagcattggatgaagagggccttctgaccaaattgggg
aggaaaatggcagaatttcctttggatccacctttgtccaagatgttgcttgccagcgtc
gaccttggatgcagtgatgagattttgaccataattgccatgatccagactggtaatatt
ttctacaggccaagggaaaagcaagcccaagcagatcagaagagggcaaagtttttccag
ccagagggtgatcatctgacactacttgctgtttatgaggcttggaaagccaagaatttt
tctgggccctggtgttttgagaattttgtgcaatctagatcgttgagaagagcacaggat
gtcaggaaacaactgctcaccattatggataagtacaaattggatgttgtaagtgctgga
aaaaacttcaccaaagtaaggaaggctatcactgctggattcttttttcacgctgccaga
aaggatccccaggaaggatacagaactctagttgagaaccaacctgtgtatatccatcca
agttctgctttgttccagaggcagccagactgggtcatataccatgagcttgtgatgaca
actaaggagtatatgcgtgaggtcactgtcatagaccccaaatggcttgttgagctggct
ccaagatttttcaaagtagcagatcctacaaagatgagcaagcggaagcgtcaagagcga
attgagccactttatgatagataccacgagccaaattcatggcgtttgagtaaacgtcgt
gcatga
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integrated database retrieval system
