Vigna umbellata (ricebean): 124836224
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Entry
124836224 CDS
T09662
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124836224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124836224
03012 Translation factors [BR:
vum03012
]
124836224
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124836224
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124836224
Translation factors [BR:
vum03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124836224
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
AAA_22
nSTAND3
T2SSE
Rad17
AAA_19
NACHT
DUF4254
ABC_tran
ATPase
BEX
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
124836224
NCBI-ProteinID:
XP_047167304
LinkDB
All DBs
Position
Unknown
AA seq
559 aa
AA seq
DB search
MRSNLLRPTLNISHRSLAFLHLPSPKSFPANLPISSSVMAYRPNYQGGGRRGGSSAAGRG
GGRRGGGGGRGGRGEQRWWDPVWRAERLRQQQAEKEVLDENEWLDKIEKMKRGGEQEMVI
KRNFSIADQKTLADMAYQHELYFHAYSKGKILVVSKVPLPDYRADLDDRHGSTQKEIRMS
TDIERKVGNLLNSSHSMGAAPSSLHSVSADLGHKQSAITIKTVSSQHTDSFKEKLSVALK
EKQELAQASDSLKEMKSFREMLPAFKMKSEFLKAVQENQVLVVSGETGCGKTTQLPQFIL
EEEISCLRGADCNIICTQPRRVSAISVATRISSERGESIGETIGYQIRLESKRSADTRLL
FCTTGVLLRQLVQDPDLKGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRLILMSAT
INADLFSKYFANAPTIHIPGFTYPVAEYFLEDVLEKSRYSIKSDFDNYEGNSRRRSKQQD
SKKDPLTEMFEDIDVDTNYKNYSLGVRKSLEAWSGVQIDLGLVRVFTLFCQINLCFMNLI
YQLLAKSLSFFSFSVRNYV
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagcaaccttttgcgccctactttgaacatatcccatcgtagcctcgcttttctg
cacctgccctcacccaaatctttccccgcgaaccttccgatttcctcttccgtcatggcc
taccgccccaactaccaaggcggcggccgcaggggaggatcctccgccgccggtcgagga
ggcggccgtcgtggaggtggtggaggacgtggcggacgcggcgagcaaaggtggtgggac
cctgtttggcgcgccgagcgcctcagacaacaacaagccgagaaggaggtgctagatgag
aatgagtggttggataagatagaaaagatgaaacgaggaggggagcaggagatggtgatt
aagcgtaactttagtattgcagatcagaaaaccctagctgatatggcctatcagcatgaa
ctctacttccatgcttacagtaaagggaagattctcgttgttagcaaagttccattgcct
gattatcgtgcagatcttgatgatcgtcatggatcaacacagaaagagattagaatgtcc
actgacattgagaggaaagtaggaaaccttttgaatagttcacattcaatgggggcagcg
ccatctagtctgcattctgtgtcagctgaccttggacataaacaatctgcaatcacaata
aaaaccgtttcttcacaacatactgattcttttaaggagaaacttagtgttgcgctcaaa
gaaaagcaagaacttgcacaggcaagtgatagcttgaaggaaatgaaatcatttagggag
atgcttcctgcatttaaaatgaagtctgagtttctaaaagccgttcaagaaaatcaggta
ttagtagtttcaggagagacaggttgtggtaaaacaacacagttgccacaattcattctg
gaagaagaaatatcgtgtttgcgtggagctgattgcaacataatttgcactcagcctcgt
cgggtatctgctatttctgtcgcaactcgaatatcttctgagagaggtgagagtattggg
gaaacaattggatatcaaatccgtcttgaatcaaaacgttctgcagatacacgcctgctt
ttctgcaccactggtgttttacttaggcagttggtacaagacccagacttgaaaggtgtt
agtcatttgctggtggatgaaattcatgaaagaggcatgaatgaagactttttaattata
attttacgtgaccttcttccacgacgtccagatttgcgtctcattttgatgagtgccact
attaatgctgatttgttctctaaatactttgcaaatgccccaacaatacacataccggga
tttacttatcctgtggcagagtacttcttagaagatgtgttggagaaatctcgatacagc
atcaagtcagattttgacaattatgaggggaattcaaggaggagaagcaaacaacaggat
tcaaagaaggatcccttgactgaaatgtttgaggatatagatgttgatactaattacaaa
aattacagcttgggtgtaagaaaatctcttgaagcttggtcgggtgtgcagattgatttg
ggattggtacgtgttttcactttattttgtcagatcaatctgtgttttatgaatttaatt
tatcagctgttggctaaatctctttcatttttctcttttagtgttagaaactatgtgtga
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