Vigna umbellata (ricebean): 124836537
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Entry
124836537 CDS
T09662
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124836537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vum03021
]
124836537
03036 Chromosome and associated proteins [BR:
vum03036
]
124836537
Transcription machinery [BR:
vum03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124836537
Coactivators
SAGA/TFTC/STAGA complex
124836537
Chromosome and associated proteins [BR:
vum03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
124836537
STAGA complex
124836537
TFTC complex
124836537
SAGA complex
124836537
SLIK complex
124836537
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
ANAPC4_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_DCAF4
Ge1_WD40
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
PROPPIN
Beta-prop_DCAF12
WD40_like
Beta-prop_VPS8
PALB2_WD40
LisH
WD_LRWD1
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
124836537
NCBI-ProteinID:
XP_047167667
LinkDB
All DBs
Position
Unknown
AA seq
671 aa
AA seq
DB search
MEDDKIVGYVTAYLKKRGFTQTEKIFQEEFRHNKTTNSSSSNSLLEPDIANHLLAFSQLE
SGPARFHDGYSKLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFR
EDHEMMHLRDLQKLEGVLSPTHLEEMEFAHSLRQSKFNIKICEYSYELLLQHLHSTQSTT
ILGIINEHINFQVSPGQPSLISDDPEAVTLTGSSQEAANRINQKEIHWGLLEDSLEERLE
KAGALLSDSEKGEGETKEGENDETKKRSIEGGKQGGSVKKVKKDKGGSTTGKSAKPEASA
VPAAPRVKPELPLPLMPTEIEQSILEDLRNRVQLSNVALPSVSFYTFINTHNSLSCSSIS
HDGSLIAGGFSDSSLKVWDMAKLGQPTASSLLQDENDTSPNDQMFGQGLGKRQYTLFQGH
SGPVYAASFSPVGDFILSSSADATIRLWSTKLNANLVCYKGHNYPVLDVQFSPVGHYFAS
SSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECV
RVFVGHRGMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSE
GSILASGSADSTVKLWDVNTSTKVSRAEEKSGNANRLRSLKTLATKSTPVYSLRFSRRNL
LFAAGALAKSG
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgataaaatagttggatatgttaccgcgtatctgaagaagagaggtttcacg
caaaccgagaagattttccaggaagagtttcggcataacaaaaccaccaattcctcctcc
agtaattcccttctcgaacccgacattgccaaccacctcctcgcattctctcaattggag
agtggtccggctaggttccacgacggctacagcaaactgcgaacatggacttattcttca
ctggatttgtacaagcacgagttgcttcgcgtgctttatcccgtgtttatccactgcttt
atggacctcgtggcgaaaggacatgttcaggaagctcggaatttcttcaatactttccgt
gaagaccacgaaatgatgcacttgcgtgaccttcagaagttagaaggggttctttctcct
acccatctggaggaaatggaattcgctcactcgcttagacagagcaaattcaacataaag
atatgtgagtattcctatgagcttctcttgcaacatctacacagtactcaatccaccact
atactcggtattataaatgagcatattaactttcaagtttcccctggacaacctagctta
atttctgatgatccggaagctgttacccttactggaagcagccaggaagcagcaaaccgg
ataaatcaaaaagaaattcattgggggttacttgaagattctcttgaagaacggctagag
aaggcaggggctttgctttcagactcggaaaagggtgaaggggaaacaaaagagggggag
aatgacgagactaagaaaagatccattgaaggaggaaagcaaggtggttcagtaaaaaag
gtaaaaaaggacaagggtggtagcacaactggaaagagtgcaaaacctgaagctagtgct
gtacctgcagctcctcgagttaagcctgaactccccttacccttaatgccaactgagatt
gaacagtccatccttgaagatttaaggaaccgtgtacagctcagcaatgttgcattgccg
tcagttagcttttacacatttataaatacacataacagtttaagctgttcatcgatatcc
catgacggatcattaattgctggaggattttctgactcatcactcaaggtttgggatatg
gcaaagcttggacaaccgactgcaagttctcttttgcaggatgagaatgacacatcacca
aatgatcaaatgtttgggcaagggcttgggaaaagacagtatacactatttcaaggtcat
tcaggacctgtttatgcagcctcttttagtcccgtgggagattttatcctttcatcctca
gcagacgcaactattcggttatggagcaccaaacttaatgccaatcttgtttgttataag
ggtcacaattaccctgtcttggatgttcagtttagtcctgtagggcattattttgccagc
tcttcacacgacagaactgctaggatttggtcaatggacaggatacagcccttaagaata
atggcaggacacttatctgatgttgattgtgtacaatggcatgccaactgcaactacatt
gcaactggttccagtgacaaaacagttcgactatgggatgtgcagagcggtgagtgtgtc
cgggtttttgttggtcacaggggtatgattttgtctttggcaatgtctcctgatggtcgc
tatatggcatctggggatgaagatggcacgatcatgatgtgggacctctctagtggtcgc
tgtctcacccctttgatcgggcacacgtcttgtgtctggtcccttgcattcagttctgaa
ggttcaattctagcatctggatctgctgattccactgtaaaattgtgggatgtaaatacg
agcaccaaggtttcaagggctgaagaaaaaagtgggaatgctaacagacttagatcgctg
aaaactctggcaaccaaatcaaccccagtttactcattgcggttttctcgaaggaatctt
ctttttgcggctggagctctagcaaaaagtgggtaa
DBGET
integrated database retrieval system
