KEGG   Vigna umbellata (ricebean): 124837039
Entry
124837039         CDS       T09662                                 
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
vum  Vigna umbellata (ricebean)
Pathway
vum03040  Spliceosome
vum04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:vum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124837039
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    124837039
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vum03041]
    124837039
   04121 Ubiquitin system [BR:vum04121]
    124837039
   03400 DNA repair and recombination proteins [BR:vum03400]
    124837039
Enzymes [BR:vum01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     124837039
Spliceosome [BR:vum03041]
 Complex B
  Other components
   Prp19 complex
    124837039
 Complex C
   Prp19-CDC5 complex
    124837039
Ubiquitin system [BR:vum04121]
 Ubiquitin ligases (E3)
  U-box type E3
   124837039
DNA repair and recombination proteins [BR:vum03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    124837039
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_MABP1-WDR62_2nd EIF3I WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_DCAF12 Beta-prop_SPT8 Beta-prop_DCAF4 U-box PROPPIN WD40_like PAS_11 zf-Nse PUMA_CC V_ATPase_I_N
Other DBs
NCBI-GeneID: 124837039
NCBI-ProteinID: XP_047168277
LinkDB
Position
Unknown
AA seq 525 aa
MNCSISGEVPEEPVVSRNSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPIKTGKIVK
PRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQAERQYPVSALNAPTANAPVLSNGKRAAEDEDLAPGAKKIHPGISSSVIS
ELTDCNAALSQQRKKRQIPATLAPIEALESYTQISSHPFHKTNKQGIISLDIHCSKDLIA
TGGIDTNAVIFDRSSGQILSTLSGHSKKVTSVKFVAQGESILTGSADKTVRLWQGSDDGN
YSCRHILKDHTAEVQAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVFDSSGSSEGYT
SAAFHPDGLILGTGTTESLVKIWDVKSQANVARFDGHAGPVTAISFSENGYFLATAAHDG
VKLWDLRKLKNFRNFAPYDSETPTNSVEFDHSGSYLAIAGSDIRIYQVANVKSEWNCIKT
FPDLSGTGKATCVKFGADSKYIAVGSMDRNLRIFGLPGEDAPTES
NT seq 1578 nt   +upstreamnt  +downstreamnt
atgaattgttccatctccggcgaagttccggaagagcccgtcgtgtccaggaactctggt
cttctcttcgagaagcgtttgatcgagcgacacatttcggattatggcaagtgtccaatt
actggcgaaccacttactatggatgacattgtaccaatcaagacagggaagatagtgaag
cccagacctgtccaggcagctagcatccctggcatgcttggaatgttccaaaatgaatgg
gatgggttgatgttatctaattttgcattggagcaacaattgcacacggcaaggcaagag
cttagtcatgctctctaccagcatgatgctgcatgccgagtgattgctagacttaaaaag
gaacgagatgaagctaggtccttacttgcgcaagcagaaaggcagtaccctgtttctgca
ctaaatgctccaactgcaaatgcccctgttctgagcaatggaaaaagagctgctgaggat
gaggatctggctcctggtgcaaagaaaattcatcctggaatatcttctagcgtaatttct
gagctaactgattgcaatgctgctctctcccagcagagaaagaagagacagattcctgcc
actttggctcctattgaagctctggagtcatatacccagatatctagtcatccctttcac
aaaacaaacaaacaaggcattatatcccttgatatccattgttctaaggacttaattgca
actggaggtattgatacaaatgctgttatttttgaccgatcttcaggacagatattatct
acactaagtggtcactccaaaaaggtgaccagtgtaaagtttgtagctcagggtgaatca
atcttaactggttcagcagataagacagttcgtctgtggcaagggtcagatgatggtaac
tatagctgcaggcacatcttaaaggatcatacagctgaggtgcaagctgtcactgtccat
gctaccaataattattttgtgactgcttcacttgatggctcttggtgtttttatgaactt
tcttcagggacatgtttgactcaggttttcgactcttcaggttcttctgaaggctacaca
tcagccgctttccatcctgatggtctcatccttggaactggtaccacagaatctcttgtt
aagatttgggatgtaaaaagccaggcaaatgttgctaggttcgatggacatgctggtcca
gtaactgccatttctttttctgagaacggatacttccttgcgactgctgctcacgatggt
gttaagctttgggatctacggaaattgaagaactttaggaattttgctccatatgattcg
gaaacaccaacaaactctgtggagttcgaccacagtggatcctaccttgcaattgctggc
tcggatataaggatttaccaagttgcaaatgtgaaatctgaatggaactgtattaaaacc
ttccctgatttatccggaacaggtaaggccacgtgtgtaaaatttggtgcagactctaaa
tacatagctgttggatcaatggaccggaatcttcgaatatttggcttgcctggcgaagat
gctcccactgagtcataa

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