Vigna umbellata (ricebean): 124837342
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Entry
124837342 CDS
T09662
Name
(RefSeq) pre-mRNA-processing factor 39-2 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
vum
Vigna umbellata (ricebean)
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vum03041
]
124837342
Spliceosome [BR:
vum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
124837342
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
Motif
Other DBs
NCBI-GeneID:
124837342
NCBI-ProteinID:
XP_047168630
LinkDB
All DBs
Position
Unknown
AA seq
1113 aa
AA seq
DB search
MAPILSSGIDGNLNLQEVISKGLSGFDEWTLLISEVEKLYPADVDKICLVYNNFLSKFPL
CHGYWRKYAAHMTCISTTDKVVEVFEKAVLAATYSVGVWFDYCSFGMSAFEDPSDIRRLF
TRAISFVGKDYLCHILWDKYIHFEFSQQQWISLAHIYIQTLKFPTKKLHQYYDSFKKLLT
ILEEGIANHELQSETCFDCEIPMVTCYKDGEIYHIINDMMDSSVGLTSSVALKRYRAIGE
MLYHNACELYSKISPFEASIRRHYFHVQPLDANQLQNWHNYLDFIELQGDFDWAVKLYER
CLIVCANYPEYWMRCVDFMEAKGGREIANYSLDRATEIYLTRVPSIHLFNARFKEQIGDV
FAARAAYVQSCEERDSDFVDNVIAKANMEKRLGNTESAFSIYNEALKRAATEEKLHALPI
LYIHFSRLKYISTNSVDAARDVLIDGIRTLPHNKLLLQELIKFSMMHGGTKHMAVIDSII
ADTISRSDGSQGLSVEDAEDISNLYLEFVDYIGTIHDVRKAWNRHIKLFPDSARKDLHEQ
SARHRKLLNLMDKREDISIVTPNQASRDSISDLQEHLHKKDEKTALLKCCENQYDATNGG
SLLGKNKNTRSNDTDAYKLQSMELNDKIEENRREFPLPVSEEPKENDPENNVPSSHLVEV
KEESTRVVKNLKNSSESDVSSEEFLRQTGRANQSSHAFQTPSNKNTYFSKGKREVESEEL
KAHSLTSMSSKSRESTCPDSGPMVSQECVAIPESHEENTRAIIGGHTINQDNSASTQDSG
YNQVYIETKSPYSARHRDQRSRKPFLPPRSSGNSGGNWHRRRNAGQFKGPKFGYRGNTDR
KQHLRQQLSPQQIHPPEGGAQMAGAPDYSSQPVLQVQQCNPGKSQFQSTATTTGLVAAHC
WPMQNMQMQNTSSQSQTPGNATSLVLQHPMQGNDQYGYMQNAQEYSQLCQYYYYQQQQQL
QHYIQLQQQPFQKEQSLQLQHSPLEPLQPQQLQQLQHSSLVPLQPQQLQHSPLEPLQPQQ
LQQQQLQQQQLQHSLLEPLQPQQLQQQVLQQQQYYQQQQPSTQLQSSSHPVENQGQVILS
SQSNGAIVSQQSDRLGSISSPVLDHSQEKSTRE
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgatactttcgtcaggtattgatggcaatctcaatcttcaagaagttatttct
aagggcttatcaggttttgatgaatggactttactgatttcagaggttgagaaattatat
ccggctgatgtggacaagatatgtctggtttataataatttcttgtccaaatttcctttg
tgtcatgggtattggaggaagtatgctgcccacatgacatgcatatccaccacagataag
gttgttgaagtgtttgaaaaagctgtgttggcagcaacatattcagtcggtgtgtggttt
gattactgcagctttggcatgtcagcttttgaggacccatccgatattcggagattgttc
actagagccatttcctttgttgggaaggactacttatgtcatatcttgtgggacaagtat
attcactttgagttttcccagcagcagtggatttctcttgctcacatttatatccaaaca
cttaagtttccaaccaaaaagttgcaccagtattatgatagttttaaaaagttactaacc
attttggaggagggcatagcaaaccatgaattgcaatcagagacatgttttgattgcgaa
attcctatggttacatgttacaaggatggtgagatttatcacattatcaatgatatgatg
gattcatctgttggattgactagttcagtagccctaaaaaggtacagggcaattggagaa
atgctttatcataatgcatgtgagctgtattcgaaaattagtccctttgaggctagtatt
cgaagacactactttcatgttcagcctcttgatgcaaatcaattgcagaattggcataat
tatctggactttattgaacttcaaggggactttgactgggctgtgaaactttatgagaga
tgtttgattgtgtgtgccaactatcctgaatactggatgcgttgtgtggacttcatggaa
gccaagggaggaagagaaatcgcaaactattctttagaccgagcaactgaaatttatttg
acgagggtgccatcaatccatttattcaatgccaggtttaaggaacaaataggagatgtt
tttgctgctcgtgctgcatatgttcaaagttgtgaagagagagattcagactttgtggac
aatgttatagcaaaagctaatatggaaaaacgtttgggaaatacagagtcagctttcagt
atatacaatgaagcactgaaaagggccgctacagaggaaaagttacatgcactcccaatt
ttatacatacatttctctcggctaaaatatattagtacaaatagtgtggatgctgccaga
gatgtcttaattgatggtatcagaactttgcctcacaacaaattgcttctgcaggagtta
ataaagttctcaatgatgcatggagggacaaagcacatggctgtaatagattcaattatt
gctgatacaatatcaaggtctgatggttcacaaggtttgagtgtagaagatgcagaggat
atatcgaacttatacctggagtttgttgactatatcggaactatacatgatgtaaggaag
gcgtggaatcggcacataaaattatttccagactctgctcggaaagacttacatgagcaa
tctgctaggcatagaaaattgcttaatttgatggacaagcgtgaagatatttctattgtc
actcccaatcaagcatctagagattctatttctgatttgcaagaacatttacataaaaaa
gatgagaaaacggcattgctgaaatgttgtgagaaccagtatgatgctactaatggtgga
tcactgttggggaaaaataaaaatactcgatctaatgatacagatgcatacaagcttcaa
agtatggaattaaatgacaaaatagaagaaaataggagagaatttcctcttcctgtttct
gaggaaccaaaggagaatgatcctgaaaataatgtgccatcttcccatttagtggaagta
aaagaggaatcaaccagagttgttaagaatttaaaaaatagttctgaatctgatgtttca
tcagaagaatttttgcgtcaaactggccgtgcaaaccaatcctcacacgcctttcaaaca
ccctcaaataaaaatacttatttttccaagggaaaacgtgaggttgagtctgaagaattg
aaggcacattctctgacaagcatgtcatcgaaatcccgggaaagcacgtgtcctgattca
ggaccaatggtatctcaggagtgtgtagcaattccagaaagccatgaggaaaatactaga
gcaataattggtggtcataccataaatcaggacaactctgctagcactcaagattctggg
tataaccaagtttacattgaaacaaaaagcccatattcagcacgccaccgagaccagaga
tcaaggaaaccatttctaccacctcggtcttctggtaatagtggtggaaattggcataga
aggagaaatgccggtcaatttaaaggaccaaaatttggttataggggaaacacggataga
aaacagcacctacggcagcagctatctccacaacagattcatccacctgaagggggtgca
caaatggctggtgctccagattactcctctcaacctgtgttgcaagttcagcaatgcaat
ccaggaaaaagtcagtttcaatctactgcgactactactgggttagtggcagctcattgt
tggcctatgcaaaacatgcagatgcagaacacttcatctcagtctcaaacaccaggcaat
gcgacatcacttgtattacaacatccaatgcaaggcaatgaccaatatggatatatgcaa
aatgcccaagagtatagtcagttatgccaatactattactaccagcaacaacaacaacta
caacattatattcaattacagcagcaaccattccagaaggaacagtcactacaactccaa
catagtccactggaacctcttcaaccgcaacagctccaacaactccaacatagttcactg
gtacctcttcaaccgcaacagctccaacatagtccgctggaacctcttcaaccgcaacag
ctccaacaacaacaactccaacaacaacaactccaacatagtctgctggaacctcttcaa
ccgcaacagctccaacaacaggttcttcagcagcagcaatattatcaacagcagcaacca
tcaacccagttgcagagcagcagtcatcctgtagaaaaccaagggcaggtaatattgtca
tcgcagagcaacggagcaatagtatcgcaacaatcagacaggcttggatcgatttcttct
ccagttttggatcattctcaagagaaatctacccgagagtga
DBGET
integrated database retrieval system
