Vigna umbellata (ricebean): 124838672
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Entry
124838672 CDS
T09662
Name
(RefSeq) LOW QUALITY PROTEIN: NPC intracellular cholesterol transporter 1
KO
K12385
Niemann-Pick C1 protein
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
124838672
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
124838672
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vum02000
]
124838672
Transporters [BR:
vum02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
124838672
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NPC1_N
Sterol-sensing
NPC1_MLD
Patched
Folate_rec
Motif
Other DBs
NCBI-GeneID:
124838672
NCBI-ProteinID:
XP_047170298
LinkDB
All DBs
Position
Unknown
AA seq
1285 aa
AA seq
DB search
MDIIFSVAFLLQVFLLSSPALSAGSQHETYRAKHSEEYCAMYDICGQRSDGKALNCPYGS
PSVKPDDLLSAKIQSLCPSITGNVCCTADQFDTLRVQVQQAVPILVGCPSCLRNFLNLFC
ELSCSPNQSLFINVTSISEVNGNMTVDGIDFYVTETFGEGLYESCKDVKFGTMNTRAIDF
VGAGASNFEEWFEFLGQKVPPGFPGSPYSILFKTATLDPSPMKLMNASVYSCNDTSLGCS
CGDCPSSSVCADPEPSPPSKDPCAIRIGSLKVRCVDFSLAILYIVLVFVLFGWALLQRRR
GRRRPESIVEPLLNDRVGEGSSFSPLPKDGNHHVEVQQIDPQGQNVVQFSFVQGCLSSFY
RTYGRWAARKPTIVLCSSLAIVVLLCLGLLRFEVETRPEKLWVGPGSKAAEEKDFFDSHL
APFYRIEQLILATIPESKHGKPPSIITEENIELLFEIQEKVDGIRANYSGLLVSLSDICL
KPLGEDCATQSILQYFQMDPDNYYDYGGVDHAEYCFQHYTSTETCFSAFKAPLEPTTALG
GFSGNNYSEASAFVITYPVNNAITKVGDENGKAIAWEKAFIQLAKEELLPMVQSSNLTLS
FSTESSIEEELKRESTADVVTILVSYIVMFAYISVTLGDTPHPSSFFLSSKVLLGLLGVL
LVMFSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCIIVDAVKRQPSNLPVEEQI
SNAMGEVGPSITLASLSEILAFAVGSFVSMPACRVFSMIAALAVLLDFLLQITAFVALVA
LDFVRAKDNRIDCFPCIKLNRSSVEENEGNRQERDGLLTWYMKEVHAPFLGLRVVKILVI
AIFLGFTLASIALCTRIEPGLEQQIALPRDSYLQGYFSNISEYLRVGPPLYFVVKDYNYS
LESKHTNQLCSISHCDSNSLLNEISRASLVPKSSYIAKPAASWLDDFLVWMSPEAFSCCR
KFTNGSYCPPDDQPPCCLPDEGPCGLGGVCKDCTTCFRHSDLVNDRPSTENFRQKLPWFL
DALPSADCAKGGHGAYTNSVDLNGYESGVIQASEFRTYHTPLNRQGDYVNAIQAARNFSA
RISASLKMDIFPYSVFYIFFEQYLDIWKFALINITIALGAIFVVCLVITSSLWSSAIVLL
VLVMIILDLMGVMAILGIQLNAVSVVNLIMAIGIAVEFCVHIVHAFTVSLGDRNQRAKTA
LCTMGASVFSGITLTKLVGVIVLCFATSEIFVVYYFQMYLALVIIGFLHGLVFLPVVLSL
FGPPLRYTHLEDDVPSVLHQNRAST
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atggatatcatcttctccgttgcttttctgttacaggtattcctgctctcttcgcctgcg
ctctctgcaggctcacagcatgaaacgtatagggctaagcattctgaagaatactgcgca
atgtatgatatatgcggtcaacgcagtgacgggaaggctctcaattgtccctatggttct
ccttcagttaagcctgacgacctgctgtctgccaaaattcaaagtttgtgtccctccatt
actggaaatgtttgctgtactgcggatcagtttgacacactaagagtacaggttcaacag
gcagtaccaattctagtgggctgtccatcatgcttgaggaattttctaaatcttttttgt
gaactttcttgctctcctaatcagagtttattcatcaatgtgacttctatttcagaggtt
aatggtaatatgactgtggatggcattgatttctatgtaactgaaacttttggagaaggt
ctatacgagtcatgtaaggatgtaaagtttgggacaatgaatacaagggccatagatttt
gttggagctggagctagcaattttgaagagtggtttgaatttcttggtcagaaagttcct
cctggatttcctggatctccttattctatactttttaagacagccactttggatccatct
ccaatgaaacttatgaatgcatctgtatattcgtgtaatgacacttcactgggttgctct
tgtggtgattgtccttcttcatctgtttgcgcggatcctgaaccttctccacccagcaaa
gatccatgtgccattagaattgggtctttaaaggttaggtgtgtggatttttcattagcc
atcttgtacattgtattggttttcgtgttgtttgggtgggcattgctgcagaggagaaga
ggaaggaggagacctgaatctattgtggaaccactgttgaatgatagggttggtgaaggg
agtagtttttctcccctcccaaaggatggaaatcatcatgtagaggtgcaacagatagat
cctcaagggcagaatgtggtgcaattttcttttgttcaaggatgcctatctagcttttac
aggacatatggaagatgggctgctagaaaacccacaattgtgctttgttcctctttggca
attgttgttttgctttgtttgggtctgcttcgttttgaggtggagacccggcctgagaag
ttatgggttggtcctggaagtaaggcagctgaagagaaagatttttttgatagtcatctt
gctccattctaccgaattgaacagctcatattagcaacaatcccagaatccaagcacggc
aagcctccaagtatcataacagaagaaaatattgaattgctttttgaaatacaggaaaag
gttgatggaattcgagcaaattattctggtttgttggtatctctgagtgacatttgcttg
aagcctttaggcgaagattgtgccactcaaagcattttgcagtattttcaaatggaccct
gacaattattacgactatggaggtgttgaccatgctgagtactgttttcagcattacact
tctacagaaacatgctttagtgcatttaaggctcctcttgagccaactacggccttggga
gggttttctggaaacaattattctgaggcttctgcatttgttatcacgtaccctgtgaat
aatgcaattacgaaagttggagatgagaatgggaaggcaatagcttgggaaaaagctttc
atccaattagctaaggaggaattgctgccaatggtgcaaagtagcaatcttaccttgtca
ttttcaactgaaagttcaattgaggaagaattaaagagagaaagcactgcagatgtagta
acaatacttgtgagctatattgtgatgtttgcttatatatcggtgaccttgggagataca
cctcatccatcttctttcttcctgtcatctaaggtattgcttggtcttttgggggttttg
cttgttatgttttctgtcctcggatcagttggatttttcagtgctattggagtaaaatca
acactaatcattatggaagttataccttttctggtgttagcagttggtgttgataacatg
tgtataatcgtagatgctgtgaagcgacaaccctcaaatttaccagttgaagaacaaata
agcaatgcaatgggtgaagttggaccttcaataacgctagccagcttatcagagattttg
gcatttgctgtagggtcatttgtttccatgccagcatgtcgtgttttctccatgattgca
gctttggcggttctactggacttccttctgcagattactgcttttgtagctttggttgca
ttagactttgtgagagctaaggacaacagaattgactgttttccatgcataaagttgaat
cggtcctctgtggaggagaatgaaggaaacaggcaggaaagagatggattattgacgtgg
tatatgaaggaggttcatgcaccatttcttggactacgggtggttaaaattttggtcatc
gccatctttcttggatttaccttagcaagcattgcattatgcactaggattgaacctggt
cttgagcaacagattgctcttccacgagattcctatcttcagggttatttcagtaacata
tctgagtaccttagagttggaccaccattatattttgttgtaaaggattacaactacagt
ttggaatccaaacacacaaatcagctatgctccattagccactgtgattcaaattctctt
ttaaatgagatatctagagcttcattagtgccaaaatcgagctacatagccaaaccagct
gcatcgtggcttgatgatttccttgtatggatgtcacctgaagcttttagctgctgtcga
aaattcacaaatggctcttattgtccacctgatgatcagccaccttgctgtttaccagat
gaaggcccgtgtggattgggtggagtgtgcaaagactgcacaacatgttttcgccactcg
gatttggtcaatgatcgtccatctacggaaaatttcagacagaagcttccctggtttctt
gatgcacttccatcagctgattgtgcaaagggtggtcatggagcttacaccaacagtgta
gatctgaatggttatgagagtggtgttatccaagcttctgagtttcgaacttatcataca
ccacttaatagacaaggtgactatgtgaatgcaatacaagctgcaaggaatttttcggcg
agaatttctgcttctttaaagatggatatttttccgtactcagtgttttacatcttcttt
gaacaatacctggacatatggaagtttgccctgatcaacattaccatagcactaggtgct
atttttgttgtttgtttggtcatcacatccagcttgtggagttcagcaatcgtattacta
gttcttgtcatgataattttggacctcatgggtgtaatggcaattttgggtatccaactc
aatgcagtgtctgttgtaaaccttattatggcaatagggattgctgtggaattttgtgtg
catatagtccatgccttcacggtaagcttgggagataggaaccaacgagcaaaaacagca
ttgtgtaccatgggggcttctgtattcagtggaatcacacttacaaaattagtcggagtt
atcgtcctttgcttcgctacatctgaaatttttgtggtttattacttccagatgtacttg
gccttggttatcattggcttcttgcacggtcttgtgtttctaccagtggtattgagcctg
tttggtcctccgttgagatatacacatttagaagatgacgtgccctctgtacttcatcag
aacagagcctctacttag
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