Vigna umbellata (ricebean): 124838716
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Entry
124838716 CDS
T09662
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124838716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vum03041
]
124838716
03009 Ribosome biogenesis [BR:
vum03009
]
124838716
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124838716
Spliceosome [BR:
vum03041
]
Complex A
U1 snRNP components
U1 related factors
124838716
Complex B
124838716
Ribosome biogenesis [BR:
vum03009
]
Eukaryotic type
Pre-60S particles
Helicases
124838716
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
124838716
NCBI-ProteinID:
XP_047170350
LinkDB
All DBs
Position
Unknown
AA seq
603 aa
AA seq
DB search
MNPYDNRYSDPASFHARRSDFIRSIPPPSLGGRGDVVPYGVFRSNGLGSAPVAPVPPFVP
PPGGFSVGRGSGRVGNGHVSDRKYDIGRSGGGRGGGGGGGGVHGFRGSRRGGRHDGGSSR
DDLNNITLPKQSFKNLVPFEKNFYVECPALRAMSEQEVMHYRASREITVHGHDVPKPVRM
FHEANFPDYCLEVIANLGFAEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALVH
VNAQPRLAHGDGPIVLVLAPTRELAIQIQEEALKFGSRTNIRSTCIYGGAPKGPQIRELR
RGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT
LLWSATWPREVETLARQFLHNPYKVIIGSPNLKANQSINQVVEVVTDMEKYHRLIRLLKE
VMDGSRILIFMETKKGCDQVTRQMRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTA
TDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLI
KILQDAGQDVSPALSAMVRSAGSGQYGSGGSFRARGRGGYGNRGLTSGSNAIPLGSKRPW
QYL
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaacccctacgacaatagatactctgatcccgcttcttttcacgctcgtcgaagcgat
ttcattagatctattccgccgccgtctctaggcggtcgcggcgacgtggttccttatggc
gtctttaggtccaatgggttaggatccgcacccgttgctccggttccaccatttgtaccc
cctcctggaggttttagcgtaggacgaggtagtggtagagtgggcaatggtcacgtgagt
gatagaaaatacgacataggtcgtagtggcggtggaagaggtggtggcggcggtggaggc
ggggttcacggttttcggggctccaggagaggaggtagacacgatggtggatcttctagg
gacgatttgaacaatattacacttccgaagcagagttttaagaatttggtcccttttgag
aagaatttttacgttgagtgccctgcgttgagagccatgtccgagcaagaagttatgcat
taccgtgcttctagagagatcaccgtgcatgggcatgatgtgccgaaacctgtacggatg
ttccatgaggcgaattttcctgattattgccttgaggtcattgccaatctgggttttgct
gagcccactccaattcaggctcagggttggcccatggcaatgaagggtagagatttaatt
ggcatagctgagactggctcgggtaaaactttggcgtatttgcttcctgctttagtgcac
gtcaatgctcaacctcgattggcacatggtgacggtcccattgtcttagtattagcacca
acgagagagctagctattcaaattcaagaagaggctctgaaatttgggtctcgaacaaat
attagaagtacgtgcatctatggtggtgcaccaaagggcccccaaattcgcgagcttaga
agaggcgttgagattgttattgcgacacctggtcgtctaatagatatgttggaagctcag
cacacaaaccttcaaagagtgacttaccttgtcttggacgaagctgatcgaatgctggac
atgggttttgaacctcagatacggaaaattgtagaccagattcgaccagataggcaaaca
ttattatggagtgctacatggccaagggaggttgaaactctggcaaggcagtttctgcac
aatccgtacaaggtaattatcgggtcaccaaacctgaaggcaaatcaatctataaatcaa
gttgttgaagttgtaacagacatggagaaatatcatagattaatcaggctgctgaaagaa
gtgatggacgggagccggattctaatttttatggagacaaaaaagggatgtgatcaagtt
acgagacaaatgagaatggatgggtggccagcactatccatccatggtgataaaaatcag
gctgaaagggattgggtcttggctgaatttaagagtggcagaagtccaataatgactgcc
actgatgttgctgcacggggtcttgacgtgaaggacattaaatgtgtgatcaattatgac
tttccatcaagcctggaagattatgtacacagaattggtcgaactggtcgtgcaggggcc
aaaggaactgcttacacattttttacgcacgccaatgccaagtttgctagggatctgatc
aagattttacaagatgctggtcaggatgtgagtcctgcattgtctgcaatggttcggtca
gctggttctggtcaatatggatcagggggaagttttcgcgcaagaggacgtggaggctat
gggaatcgaggtttgacatcaggttccaatgccattcctctaggttcgaagaggccttgg
cagtatctatag
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