KEGG   Vigna umbellata (ricebean): 124838763
Entry
124838763         CDS       T09662                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
vum  Vigna umbellata (ricebean)
Pathway
vum03082  ATP-dependent chromatin remodeling
vum03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:vum00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    124838763
   03083 Polycomb repressive complex
    124838763
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:vum03036]
    124838763
Enzymes [BR:vum01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     124838763
Chromosome and associated proteins [BR:vum03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     124838763
   HDAC complexes
    Sin3A-HDAC complex
     124838763
    BRAF-HDAC complex
     124838763
    REST complex
     124838763
    SHIP complex
     124838763
    MiDAC complex
     124838763
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     124838763
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    124838763
  Chromatin remodeling factors
   NuRD complex
    124838763
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 124838763
NCBI-ProteinID: XP_047170408
LinkDB
Position
Unknown
AA seq 475 aa
MGMMEEESSNSNTEGGASLPSSGSDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHN
LIVHYSLHRRMEINRPFPASPNDIRRFHSDDYVHFLSSVSPETLADTSFSRQLKRFNVGE
DCPVFDGLFDFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVL
GILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGVGS
GKNYAVNVPLNDGMDDENFRGLFRTVIHKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSV
KGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFG
PDYTLYVDPSNMENLNTPKDMEKIRITLLEQISRLPHAPSVPFQTTPPTLEIPEEAEEGM
DRRPKLRKWDGEDYDSDPDEGEKANSKFSSVTSHMRDIADDMEEEKPGVHPSSCC
NT seq 1428 nt   +upstreamnt  +downstreamnt
atgggaatgatggaagaggagagtagcaacagcaacacagaaggtggagcttcgcttcca
tcatcaggttcagacgccaagaagcgaagagttacgtacttttacgaaccaactatcggc
gattactactacggtcagggccacccaatgaagccgcaccgcatccgcatggcgcacaac
cttatcgtccactactccctccatcgccgcatggagattaaccgccctttcccagcctcc
cccaacgacattcgccgctttcactccgatgactacgttcacttcctctcttccgtctct
cccgagaccctcgcggacacctccttctcgcgtcaactcaagcgcttcaacgtcggcgaa
gactgtcctgtcttcgacggcctcttcgacttctgtcaggcttccgctggtggctccatc
ggcgccgccgtcaaactcaaccgcggcgacgccgacatcgccatcaattgggccggcggc
ctccaccacgccaagaaatccgaagcctctggattctgttacgtcaacgacattgttctc
ggtatcctcgagcttctcaaagttcacaggcgagttctgtatgttgacattgatgttcac
catggtgatggggtcgaggaggccttttacaccactgatagagtgatgacagtctctttt
cacaagtttggtgattttttccctggcacaggccatatcaaagacactggggtgggctcg
ggaaagaattatgctgtcaatgtcccattaaacgacggaatggatgatgaaaattttcgt
ggtctgtttcgaactgtcattcataaagtcatggaggtttatcagcctgaggcagttgtt
cttcaatgtggagctgattcattgtctggtgacaggttgggttgcttcaacttgtctgtg
aaaggtcacgcagattgccttcgattccttagatctttcaatgttccattaatggttttg
ggtggtggtggatatacaattcggaatgttgcccgctgttggtgttatgagacagcagtg
gcagtaggagttgagcctgacaataagttgccttataatgaatattatgaatattttggt
ccagattatactctctatgtcgatccaagcaacatggagaacctaaacacacccaaggat
atggaaaaaataaggatcacactgctagaacagatttcccgacttccccatgctcccagt
gtaccttttcagacaacaccacctaccttagaaattccagaagaggcggaagaaggcatg
gatagaagaccaaaacttcgcaaatgggatggtgaagattatgattctgaccctgatgaa
ggtgaaaaagctaattccaagttctcaagtgtcacttcccatatgagggatattgcagat
gacatggaagaagagaagccaggagtgcatccctcatcttgttgttga

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