Vigna umbellata (ricebean): 124838985
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Entry
124838985 CDS
T09662
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124838985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vum03041
]
124838985
03009 Ribosome biogenesis [BR:
vum03009
]
124838985
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124838985
Spliceosome [BR:
vum03041
]
Complex A
U2 snRNP components
U2 related factors
124838985
Complex B
124838985
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
124838985
Ribosome biogenesis [BR:
vum03009
]
Eukaryotic type
90S particles
Helicases
124838985
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
ResIII
SRP54
FtsK_SpoIIIE
AAA_7
ABC_tran
T2SSE
AAA_33
AAA_30
NACHT
Motif
Other DBs
NCBI-GeneID:
124838985
NCBI-ProteinID:
XP_047170671
LinkDB
All DBs
Position
Unknown
AA seq
658 aa
AA seq
DB search
KEEFLQVLKDNQTLILVGETGSGKTTQIPQFVLDAVELETPDKRRKMMIACTQPRRVAAM
SVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYVSNDGMLLREAMTDPLLERYKVII
LDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRLHP
VEIFYTQEPERDLEAGIRTVVQIHMCDHLEIFVFLTGEEEIEDACRKITKEISNLGDQVG
PVKVVPLYSTLPPAMQQKIFEAPPPPLKEGGIPGRKIVVSTNIAETSLTIDGIVYVIDPG
FAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYP
EILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKLGE
IMSEFPLDPQMSKMLVVSPEFNCSNEILSISAALSIPNCFVRPREAQKAADEAKARFGHI
DGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKQCSTDF
NSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYV
LTSRNFIRTVTDIRGEWLVDVAPHYYDLSNFPQCEAKRVLEKLYKKREKRRRKTRSRR
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
aaagaagagttcttacaagttctcaaagataaccagactttgattcttgtcggtgaaact
ggtagtggcaaaaccactcagattcctcagtttgttttggatgctgtcgagttagagaca
ccagacaaacgtaggaagatgatgattgcgtgcactcagcctcggagagtggctgcgatg
tctgtttcgcgtcgtgtggctgaagagatggatgtaaccataggggaagaggttggttac
agtatcagatttgaagactgcagtagtgcgaggacagttttgaagtatgtatctaacgat
ggtatgctcttaagggaagcaatgacagatccgctgttggaacggtacaaggttattatt
cttgatgaggctcacgagaggacattggccactgatgtgttatttggccttctgaaagaa
gtgcttaaaaatagacctgacttgaagttggtggttatgagtgctactcttgaagctgaa
aagtttcagggctatttttttggtgcccctctcatgaaagttcctggaaggctacatcct
gttgaaattttctacacacaggaacctgaaagggatttggaggctggcattaggacagtg
gtacaaatacacatgtgtgaccacctggagatatttgtttttctgactggagaggaagag
atagaagatgcttgccgcaaaataacaaaagaaatttctaatctgggagatcaggtgggc
ccggtgaaagtggtgcccctgtattctacccttcctccagctatgcagcagaagattttt
gaggcaccgccacctccattgaaggagggtggaattcctggaaggaagattgtggtctca
acaaacatagcagaaacttcgttgacaattgatggtattgtttatgtcattgaccctggc
tttgctaagcagaaggtttataatccacgagttcgtgtggagtctttattagtatcacca
atatcaaaagctagtgcacatcagaggtctgggcgtgccggaagaactcaaccagggaaa
tgctttagactttatacagagagaagtttcaataatgatcttcagccacagacctatcca
gaaattttaagatcaaatcttgccaatacagttcttactttgaagaaactaggcatagat
gatttagtgcattttgatttcatggacccgcctgctcctgagacattaatgcgtgcattg
gaagtgttgaattacttgggtgcactggatgatgatggtaacttaactaagctgggtgag
attatgagtgaatttcccttggatccacagatgtcgaagatgcttgttgtcagtcctgaa
ttcaactgttcaaatgagattctgtcaatttctgctgctctgtccatacccaattgcttt
gtccggcctagggaggctcaaaaagctgcggatgaagctaaagctaggtttgggcacatt
gatggagatcatctcacgctgttgaatgtctatcacgcatacaagcaaaataatgaggat
ccctcttggtgctatgataactttgttaatcatagggcattgaaatcagctgataatgtt
agacaacagttagtgcgtatcatggcccggtttaatctgaagcaatgcagcactgacttt
aatagtcgcgactattatgtcaacataagaaaagctatgctagctgggtatttcatgcag
gtagctcacttggagcgtacaggacactacttgacggtgaaagacaaccaggtggtgcat
ttgcatccatcaaattgcctggaccacaagcctgaatgggtaatttataacgaatatgtt
cttaccagtcggaattttattcgtactgttacagacatacgaggggaatggttggttgat
gtagcaccacattactatgatttgtctaatttcccccaatgtgaggcaaagcgtgttcta
gagaaactttacaagaagcgagaaaagagaaggaggaaaacccggagtcgcagataa
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