Vigna umbellata (ricebean): 124839296
Help
Entry
124839296 CDS
T09662
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03020
RNA polymerase
vum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124839296
09124 Replication and repair
03420 Nucleotide excision repair
124839296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vum03021
]
124839296
03400 DNA repair and recombination proteins [BR:
vum03400
]
124839296
Enzymes [BR:
vum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124839296
Transcription machinery [BR:
vum03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124839296
DNA repair and recombination proteins [BR:
vum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124839296
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
124839296
NCBI-ProteinID:
XP_047171023
LinkDB
All DBs
Position
Unknown
AA seq
1196 aa
AA seq
DB search
MDLEEEQEYEEQMMEDEEDEDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQ
EIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAAR
LRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKD
LTELGECPYDQGGYFVINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQN
RPPSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYD
FSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHV
GIGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL
TRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNR
LTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI
TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRR
RVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEEGG
WHDLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEEAYSDTYTHCEIHPSLILGVCA
SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH
FRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED
FGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRR
DHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT
QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI
SKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT
RQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEQCGLIAIANLK
KNSFECRGCKNKTDIVQVFIPYACKLLFQELMAMAIAPRMLTKDVKSKMKDQKKGA
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggatttggaagaggagcaggagtacgaggagcaaatgatggaggacgaagaggacgag
gacgaggacgagatcacgcaggaagacgcgtgggccgttatctcggcgtacttcgaagag
aaaggcctcgttcgtcagcagctcgattccttcgacgagttcatccaaaacaccatgcag
gaaatcgtcgatgagtctgctgacattgaaattcgacctgagtctcagcacaatcctggt
caccaatccgatttcgcagagactatttataaaatcagtttcggtcagatttacttgagt
aagcctatgatgacagagtctgatggagaaactgccaccttgtttcccaaggctgctagg
ttaaggaatcttacgtattcagctcctctgtatgttgatgtctctaagagggttataaag
aaggggcatgatggtgaagaggtcactgagactcaggatttcaccaaagttttcattggc
aaggttcctataatgcttcggtctagttactgcacattataccagaattcagagaaggat
ttgactgagcttggggaatgcccatatgatcaaggtgggtatttcgttattaatgggagt
gagaaagttctgattgctcaggagaagatgagcaccaaccatgtctatgtctttaagaag
aggcagccaaacaagtatgcctacgtggctgaagttcggtccatggcagagtcacagaac
agaccacccagtactatgtttgtgcgcatgctttctcggactagttccaaagggggttct
tcaggacaatatatacgtgccactcttccttatattcgaactgaaattcccatcattatt
gtgtttcgagcattggggtttgttgctgataaagatatattagagcatatatgctatgac
ttttcggacactcaaatgatggagttgctacgtccttctctggaagaagcgtttgtaatt
caaaatcaacaggttgcacttgactacattgggaaaagaggagccactgttggtgtaacc
aaggaaaagagaattaagtatgctaaggagatccttcaaaaggagatgcttcctcatgtt
ggcattggggaatattgtgagaccaagaaagcttactattttggatatatcattcaccgg
ttactactctgtgcacttgggcggagagctgaggatgatagggatcattacggaaacaag
aggctggatctggccggtcctttacttggtggcctatttagaatgctattcagaaagcta
acaagagatgtcagggcgtatgtacagaagtgtgttgataatgggaaagatgttaatctg
caatttgctatcaaagcaaaaaccatcacaagtggccttaaatactcacttgctactggt
aattgggggcaagcaaatgctgcagggactagagctggagtttcacaggtgctgaaccgc
ttaacctatgcatccactttatcgcacttgcgaagactgaattccccaatagggcgtgaa
gggaagttggccaaaccaagacaattgcataattcacaatggggaatgatgtgtccagca
gaaacacccgaaggacaagcatgtggactggtgaagaacctggcattgatggtctacata
acagttggttcagctgcatatcctattctagagtttttggaagaatggggcacagagaat
tttgaggaaatttctcctgcagtgattccccaagcaacaaaaatttttgtaaacggttgc
tggatgggtatccatcgtgatcctgatatgttggtgagaacattaagaaagctgagacga
cgggttgatgttaacactgaagttggggttgtcagagatatccgtcttaaagagttgcgt
atatatacagactatggtcgttgcagtcgtcctttattcattgtggataagcaaaggctt
ctcataaagaagaaggatatccatgctttacaacaaagggaatcccctgaagagggtgga
tggcatgatctagtgtccaagggctttatagaatatattgacacggaagaagaagagact
acaatgatttccatgacaattaatgatcttgtacaagctaggatcaatccagaagaagca
tattctgatacgtatactcattgtgaaatccacccatcactgattttgggtgtatgtgcg
tccatcataccatttcctgatcacaatcagtccccacgtaatacgtatcagtctgcaatg
ggaaagcaagcaatgggaatatatgttaccaactaccagtttcggatggacaccttggcc
tatgttttatattatccacaaaagccattggtcactacaagagccatggagcatcttcat
ttccgtcaactcccagctggaattaatgccatcgtggccatttcctgttattctggttac
aatcaagaagattctgtgatcatgaaccaatcgtcaatagaccgagggttctttcggtct
ctgtttttccgttcatatagggatgaagagaagaagatgggaaccctagtcaaagaagat
tttggccgtccagatagagctaacaccatgggaatgagacacggttcttatgataagctg
gatgatgatggtcttgcaccaccaggcacaagagtatctggagaggatgttattattgga
aagaccaccccaatatctcaagaggaggcacagggacaagctttacgatacactaggcgt
gatcacagcataagcttacgtcacagtgaaactggaattgttgatcaagttttgctgaca
acaaatgctgatggattgagatttgtgaaagtacgagtgagatcggttcgtataccacag
attggtgacaaattcagtagtagacatggtcagaagggtactgttggtatgacttatacg
caagaagacatgccctggactgtggaaggcatcacccctgatattattgtcaatccacat
gccattccttctcgaatgacaattggtcagcttatcgagtgtatcatggggaaggtggca
gctcacatgggaaaagaaggagatgctactccttttacagatgttactgtggacaatatc
agcaaagctctacacaaatgtgggtatcaaatgcgtggtttcgagactatgtacaatggt
catacaggtagacgtctcagcgcaatgattttccttggtcctacatattatcaaagactg
aagcacatggttgacgacaagatccattctcgtggtcggggtcctgtgcagatcctcaca
aggcaacctgcagagggacggtcacgagatggaggtcttcgatttggagagatggaacga
gattgcatgatagctcacggagctgctcacttcctgaaggaaaggttgtttgatcaaagt
gatgcatatagggttcatgtatgtgagcaatgtgggttgatagctattgcaaatctcaag
aagaattcctttgagtgcagggggtgcaaaaacaaaactgacattgttcaggttttcatt
ccgtatgcttgtaaactcctcttccaagagttaatggctatggctatagctccaagaatg
cttacaaaagacgtcaaatctaaaatgaaggaccaaaagaagggagcctga
DBGET
integrated database retrieval system
