Vigna umbellata (ricebean): 124839965
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Entry
124839965 CDS
T09662
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
124839965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vum03400
]
124839965
Enzymes [BR:
vum01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
124839965
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
124839965
DNA repair and recombination proteins [BR:
vum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
124839965
BRITE hierarchy
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
NFACT_N
Phage_int_SAM_5
Motif
Other DBs
NCBI-GeneID:
124839965
NCBI-ProteinID:
XP_047171872
LinkDB
All DBs
Position
Unknown
AA seq
397 aa
AA seq
DB search
MPELPEVEAARRAVEENCVGKKIKKCIVADDSKVIDAVSRSDFEASVLGKLIVAAHRKGK
NMWLQLDSPPFPSFQFGMAGAVYIKGVAVTKYKRSAVKDEDEWPSKYSKFFIELDDGLEL
SFTDKRRFAKVRLLEDPTSVPPVSELGPDALFEQMTLEKFTESLHKRKTEIKALLLDQSY
ISGIGNWVADEVLYQARIHPRQAASSLSDASCSTLYKCIKEVIEKAVEVGADSSQYPNSW
IFHSREKKPDKAFVDGKKIDFITAGGRTTAYVPELQKLSGSVDIKETGKTKTQASKKVST
ADDTETPTDSKEGDLGSVKSKKGAKAGAKGRKPAKKKKPEESDEDNDSDSGTDCDTDQVV
KKNPGIVTNRKQVGEEKLSKKRVQSNQTGRSSKRKAK
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgccggagcttccagaggtagaggcggcgaggagggccgtcgaggaaaactgcgtcggc
aagaaaataaagaaatgcattgtcgccgatgattccaaagtcatcgacgccgtttctcgc
tcggacttcgaagcttccgttctcggcaagctcatcgtcgctgctcaccggaagggaaag
aacatgtggcttcagcttgattcccctccttttccttcattccaattcggcatggctggt
gctgtgtacattaaaggagtcgcagtaacaaagtacaaaaggtcagctgtgaaggatgag
gatgagtggccctcaaaatattcaaaattcttcattgagttagatgatggattagagttg
tctttcactgacaagaggcgatttgctaaagttcgtcttcttgaagatccaacatcagtg
ccacccgtatctgagcttggtcctgatgctctttttgaacaaatgacacttgagaagttt
acagagtctttgcacaagaggaaaactgaaatcaaggctttattacttgatcaaagctat
atttcaggtattggaaattgggtggctgatgaagtgctgtaccaagcaagaattcatcca
cggcaggcagcttctagcctgtctgatgcaagctgctcaactttgtacaaatgcattaaa
gaggtcattgaaaaagcagttgaggttggagcagatagtagtcagtatcctaacagttgg
atatttcattcacgggaaaagaagcctgacaaggcttttgttgatgggaaaaaaattgac
ttcatcactgctggtggtaggacaactgcttacgtgccagagttgcaaaaacttagtgga
tctgtcgatataaaagaaactggtaagactaaaacgcaagcttcaaagaaagtaagtaca
gctgatgacactgagacaccaacagatagtaaagaaggggatctcggaagtgtcaaatca
aagaagggggcaaaagctggagctaaaggcaggaagcctgctaaaaagaaaaaacccgag
gaaagtgatgaagacaatgacagtgattctggtacggattgtgatactgatcaagttgta
aagaagaatccaggcatcgtgactaataggaaacaagttggggaagagaagctatcaaag
aaaagagttcaaagcaatcaaactggtaggagttcaaaaaggaaagctaagtag
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