Vigna umbellata (ricebean): 124840481
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Entry
124840481 CDS
T09662
Name
(RefSeq) probable ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124840481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124840481
03400 DNA repair and recombination proteins [BR:
vum03400
]
124840481
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
124840481
Messenger RNA biogenesis [BR:
vum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
124840481
DNA repair and recombination proteins [BR:
vum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
124840481
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
RecQ_Zn_bind
HRDC
ResIII
Helicase_Sgs1
PTEN2_C2
Motif
Other DBs
NCBI-GeneID:
124840481
NCBI-ProteinID:
XP_047172497
LinkDB
All DBs
Position
Unknown
AA seq
917 aa
AA seq
DB search
METVPSVLKKYFGFSHFRPYQREVIEKIIERRDCLVVMATGSGKSLCYQVPPLVVKKTGI
VVSPLISLMQDQVMALKQRGIRAEYLGSAQKDFTVHSKAERGQFDILFMTPEKACTVPTS
FWTNLLKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLREVLLDVPFVGLTATATEKVRF
DIISSLKMDNPYVTIGSFDRTNLFYGVKLLNRGQSFIDELVREISKEVATGGSTIIYCTT
IKDVEQVFKSFTEAGIEAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNI
RQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDIKSEKQRKAVM
ESLLAAERYCVLTTCRRKFLLEYFGEKISADRCGNCDNCKVSKKERDMSREAFLLMACIH
SCNGRWGLNMPIDVLRGSRAKKVLEVQFDKLPLHGLGKNYPANWWKSLGQQLISQGYLKE
TVSDVYRTISVSSRGEQFLASSRPDYQPPLVLTLTAEMLGEEDNGNTQDEFKTLSTSELD
GFSEAERKLHQMLLEERLELARSVGTAPYAICGDQTIRKIALTRPSTKARLANINGVNQH
LVMKYGDHFLQVIQKLSQGLNLSLDGEERVPTASLQTNTVTKVSPLTNKSKKLTSAKFEA
WKMWHEDGLSIHDIANLEVRSAPIKEQTVAEYLLEAAQEGLPFDWVRFSKMIGLTQEIMS
EIQGAISKVGSTDKLKPIKNELPEDISYQHIKTYLSMRNCGISLETNQSGSNQTGKDDEL
AHNASNLSDCTLETCPDRQCEDDISVKGLAEQSDLEMDEVPSLPVNGSEEQNISNAREGE
FTRKRQRVSETEEVNSTRLKATVSSVVEWMKNLDEGATLSNILEHFNGSSEDSVVELLNC
LECDFLIYRKGNVYRVL
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggagaccgttccctctgttctcaagaaatactttgggttttctcattttcggccttat
cagagagaagttattgagaaaattatcgagagaagggattgtttggtagtcatggctact
ggtagtgggaagtccttgtgctatcaggtacctcccttggttgttaaaaagactgggata
gttgtgagccctctgatatcgttaatgcaagaccaggtgatggctttaaaacaacgaggt
attagagctgaatatcttggaagtgctcagaaggatttcactgtgcactctaaagctgaa
cgtggtcaatttgacattttgttcatgactcctgagaaggcatgcacagttcctaccagt
ttctggaccaacttactaaaggctggaattagtctttttgctgttgatgaagcccattgc
atatcggaatggggacatgattttagggtggaatacaagcatttagacaagttacgtgag
gtcttgcttgatgttccttttgttggtctaactgcgactgctactgaaaaggttcgattt
gacatcatcagttccctgaagatggataacccttatgttacgattggttcatttgatcgc
acaaatcttttctatggtgtcaaactattgaaccgtggacaatcttttattgatgagctt
gtgcgggaaatttcaaaagaagttgctactggtggttcaactataatttattgcacaaca
atcaaagatgtagagcaggtattcaagtcatttacagaagcaggcattgaggcaggaatg
taccatggccaaatgaatggaaaagctcgagaggagtctcatagactatttgttagagat
gaactgcaagtcatggtggccaccattgcttttggcatgggcatagataaacctaacatt
agacaagtgattcactatggttgccctaaaagtctagaatcctactaccaggaaagtgga
cgatgtggtagagatggtatagcttctgtttgttggctttattacacaagaagtgacttt
gcaaagggcgacttttactgtggagatataaaatcagaaaaacaaagaaaagctgttatg
gagtcattgctcgcagctgaacgctattgtgtgctgacaacttgcagaagaaagttcttg
cttgaatactttggggaaaaaatttcagctgatagatgcgggaactgtgataattgcaaa
gtctcaaagaaggagcgagacatgtcaagggaagcatttcttctaatggcttgcattcat
tcatgcaatggcagatggggccttaatatgcctattgatgtcctgcgcgggtctcgagcc
aaaaaagttctcgaggttcagtttgataagcttccacttcatgggctggggaaaaattat
ccagcaaattggtggaaatcacttgggcagcaattgatttctcaaggttatctgaaggag
actgttagtgacgtatacagaactataagtgtcagttcaagaggagagcagtttttggcc
tcttcaagaccagattatcaacctcctttagttttgacattgactgctgaaatgcttgga
gaagaagataatggaaacacacaagacgaatttaaaactttatccacttcagaattagat
ggtttttcagaggctgagagaaagctccatcaaatgcttttggaagaaagattagagctt
gcaagaagtgtcggaacagctccatatgctatctgtggagatcaaacgatcaggaaaatt
gctttgacaagaccatctacaaaagcaagactagcaaacattaatggtgtaaatcagcac
ctagtgatgaaatatggagatcattttcttcaagttattcagaaactgtcacaaggacta
aacctatcattggacggggaagaaagggtcccaacggctagtttgcaaactaatacagta
acgaaagtgtctccactaaccaacaaatccaagaagttgacatcagcgaagtttgaagca
tggaaaatgtggcatgaagatggtctttctattcacgatattgctaacttagaagttaga
tcggctcctataaaagaacaaactgttgctgaatatctactggaagctgcccaagaagga
ttaccttttgattgggttagattcagcaagatgataggactcactcaagagatcatgtca
gaaattcagggtgctatttcaaaagttggatctacagacaagctgaagcctataaaaaat
gaattgccagaagatataagttatcagcacatcaagacttatttgtcaatgcgaaactgt
ggtatatccttggaaactaatcagtctggaagtaaccaaaccgggaaagatgacgaactt
gcacacaatgcttcaaatttgtcagactgtactttagaaacatgtcctgacaggcaatgt
gaagatgacatttctgtaaaaggtttggctgaacaaagtgacttagaaatggatgaggta
ccttctttacctgtcaacggttctgaggaacagaatatttcaaatgccagggaaggggaa
ttcacaagaaaacgacaaagggtcagtgaaacggaggaagtaaactcaactagattgaag
gctacagtgagttctgttgtagagtggatgaagaaccttgatgaaggggctacgttgagc
aatattttggaacacttcaatggatccagtgaagattctgtggttgaactgctcaattgc
ttagagtgtgactttttaatatataggaaagggaacgtgtacagggttttgtaa
DBGET
integrated database retrieval system
