Vigna umbellata (ricebean): 124840688
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Entry
124840688 CDS
T09662
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124840688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vum03041
]
124840688
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124840688
Spliceosome [BR:
vum03041
]
Complex C
Other components
Step II factors
124840688
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11
KH_DEAH11_1st
Helicase_C
IBR
OB_NTP_bind
DEAD
AAA_19
AAA_22
zf-C3HC4
zf-RING_UBOX
WHD_HA2
Rcat_RNF216
KH_SLS1_1
nSTAND_NTPase5
ABC_tran
nSTAND3
AAA_29
AAA_30
DAP3
Motif
Other DBs
NCBI-GeneID:
124840688
NCBI-ProteinID:
XP_047172745
LinkDB
All DBs
Position
Unknown
AA seq
1732 aa
AA seq
DB search
MKKSFYPNSSPMSHGTRPRFDFHPQWRPHSHPHAHAARVHRPPEPNLKVKPYFKVVLRLG
FHPSSREDIEALIKDCEHKEQSFTFYPEDEVAAVLSYKNWEEACVAAAWFWETLLSEKHD
YTPELDSNASVTDSLDGRLRVLFRRHVMKVMEGKEVKRWVEESKRLSKEIERVSRLLRNK
HLHMSWYNRYIDQRKGLVDEKDQVERRLMEFYSAMDCILNHLAEGTDMVGANVEGSRSVN
VLEFDGCCDWKRIHCLIRRECRRLEDGLPIYAYRKDILREIHEQKMVVLIGETGSGKSTQ
LVQFLADSGIGADESIVCTQSRKIAAKSVAQRVQEESSGCYEGQSITCSTFSSLNELDSR
IIFTTDHCLLQHYMRNDNLSGISCVIVDEAHERSLNTDLLMTLLKNLLYRRGEMRLIIMS
ATADANQLSDYFDGCSIFRVQGRSFPVDIKYAPPDHAEYSGSSVVALDVLDVVRKATEVH
RTEKEGTILAFLTSQIEVEYACEKFKIIPSAVALPLHGKLSSDEQYRVFQNYPGKRKVIF
STNLAETSLTIPGVKYVIDSGLVKDCRYDPGSGMNVLKVCWISKSSADQRAGRAGRTEPG
VCYRLYSETDYQSMDLNQEPEIRRVHLGVAVLRILALRVKNIQDFDFVDAPSSSSIDIAV
RNLIQLGAIEMKNDGLDLTPEGWFLAKLGIEPRLGKLILGCYKHRLGREGLVLAAVMANA
RTIFCRFGSEFEKRRSDCLKVQFCHCDGDLFTLLSVYKEWDALPWGERKEWCFKNSINAK
SMRRCQDTILEYESCLEREHKIVIPSYWHWDPYTPSSYDKNLKRVILSSLAENVAMYSGC
NQLGYEVAQTGQHVQLHPSCSLLVFAQKPNWVVFGEILSISNQYLVCVSTFDFQSLYDLC
PAPLFDVSKMVEGKLQMKTLCGLGRIVLKKFCGKANCNLFALVSRIRKACSEERIYIEVN
VDQNAVHLFATSNNMDTALALVNGALEFERKFLRAECIDKFLYHGSGPSPIALFGSGAEI
KHLELEKRSLSVEVCHANINAIDDKELLMFLEKNTSGSICAVHKSAGNMKDEDKERWGRI
TFTSPEFVKRATELDGHEFCGSSLKIFPSQLGGDKTFSYTDVKAKICWPRRISRGFAVVK
CDIKDVNDILRDFYNLAIGGRYVRCEVGKKSMDSVVINGLGKDLSEAEILDVLRTATNRR
ILDFFLVRGDAVENPPCSVLEEALLKAIYPSLPKRNPHFSSCRVQVFVPGPKDAFMTALI
SFDGRLHLEAAKALEHIEGKVLPGCLSWQKIKCQRSFQSSLIFPAPVFRVIREQLDGVLA
RFKNLRGLEIEEDRTFNGSHRVKITANATRTVADVRRPLEELLRGKTIEHDSLTPAVLQL
MMSKDGFNLKNSLEQETGTYILFDRQNLNLRVFGYPNKVALAHDKVIQSLLSLHEEKQLE
IHLRGRDLPPDLMKQVIKNFGPDLHGLKERVPGVDLKLNIRRHVISLNGRKELKTRVEEI
IFEIARSCHHLVWTFANDGPNCPICLCEVEDPFQLEGCGHLFCRLCLVEQCESAIKNQGT
FPICCTHKDCGDVILLTDLRSLLFSDKLEELFRASLGAFVTTSGGTYRFCPSPDCPSIYR
VADPGTAGELFVCGACYSETCTRCHLEYHPYLSCERYKEFKEDPDSSLMEWRRGKDDEVK
SCLACGHVIEKVDGCNHVECKCGKHVCWVCLEFFGGSDECYSHLRNVHTTII
NT seq
5199 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaatctttctaccctaactcctccccaatgtctcacggcactcgtccccgcttt
gattttcacccacaatggaggccgcactcacacccacatgcacatgccgcacgcgtccac
cgtccgccggagcctaatttaaaggtgaagccttatttcaaggtggtgctccgactcggc
ttccacccttccagccgcgaggacatcgaggccctgatcaaagactgtgagcacaaggag
cagtcttttaccttttaccccgaggacgaggtcgctgccgtgctcagttacaagaattgg
gaggaggcgtgcgttgcggccgcctggttctgggagacgctgctgtcggagaagcacgat
tatacgccggagctggactccaacgcttcggtgacggacagtctggatggtcgccttcga
gtgctgttcaggaggcacgtgatgaaggtgatggaggggaaggaggttaagcggtgggtg
gaagagagtaaaaggttgtcgaaggaaattgagagggtttctcgtttgctcaggaataag
cacttgcatatgagctggtataacagatatattgaccagaggaaagggctcgttgatgag
aaagaccaggttgaaaggaggttgatggagttctactctgcgatggattgtatactgaat
catctggcggagggaactgacatggttggtgccaacgtggagggtagtcggagtgtgaat
gtgttggagtttgatggatgttgtgattggaagcgcattcactgcctgatcagaagggag
tgtcggagactggaggatggattgcccatttatgcttacaggaaggatattcttcgggag
atacatgagcagaagatggtggtattaattggagagactggatctggtaagagtacacag
ttagttcagtttctagctgattctggcattggtgctgatgaatccattgtatgcacccaa
tctcgcaagattgctgccaaatcagtggctcaaagggttcaggaagaaagcagcggttgt
tatgaagggcaatcaatcacatgttctacgttttcatccttgaatgagcttgattccagg
ataatattcacgacagatcactgtttattgcagcactacatgaggaatgataatttgtct
gggatctcgtgcgtcatagttgatgaggctcacgagaggagcttaaatacagatttactg
atgactttgttgaagaatttactttataggaggggtgagatgcggcttatcattatgtct
gctacagctgatgcaaatcagctatctgattactttgatggttgtagtatttttcgtgtg
caagggagaagttttccagtggatatcaaatacgctcctcctgaccatgctgagtattct
ggttcttctgttgttgcattggatgttttggatgttgtcagaaaggcaacagaggttcac
agaacagagaaagagggaactatccttgcttttctgacctctcagatagaagtagaatat
gcctgtgagaagtttaaaataataccctctgcagttgccctgcccttacatggaaaactt
tcatctgatgagcaatatcgtgtttttcagaactaccctggaaagcgaaaagtgatattt
tcaacaaatcttgcggagacatcactgacaattcctggtgttaaatatgtgattgattct
ggtttagttaaagactgcagatatgatcctggcagcgggatgaatgtacttaaggtgtgc
tggattagtaagagctctgctgatcaacgggctggtcgtgctgggaggaccgaacctggt
gtgtgctataggctgtattcagaaactgattatcaatcaatggacctaaatcaagagcca
gagattcggcgagttcatcttggtgtagcagttttgaggatcctggctctgagagtgaag
aatattcaggattttgattttgtggatgctccaagttctagctctattgacatagcagtc
aggaatctaattcagttaggagcaattgagatgaaaaacgatggtcttgatctaacgcca
gagggttggttccttgccaaattgggaattgaacccaggcttggtaaacttattcttggc
tgttacaaacatcgtttgggtagggaaggtcttgttctggctgctgtgatggccaatgct
cgtacgatattttgtagatttggcagtgaatttgaaaaacgaagatccgattgtcttaaa
gtgcaattttgccattgtgatggtgacctctttactcttctatccgtgtacaaggaatgg
gatgctttgccttggggagaaaggaaagaatggtgtttcaaaaacagcatcaatgctaag
tccatgaggaggtgccaagacacaattttggagtatgaaagttgccttgagcgtgaacat
aaaattgttattccgagttattggcattgggacccttatacaccctctagttatgataag
aacttgaagagggttatactgtcctcacttgctgagaatgtagccatgtactctggctgc
aatcaacttggttatgaagtggcgcaaactgggcaacatgttcaactgcatccatcatgt
tcattgcttgtttttgctcagaaaccaaattgggtggtttttggtgagattctttccatc
tctaatcaatatttggtctgcgtgagcacatttgactttcaatcattatatgacctttgc
ccagctcccttgtttgatgtatctaaaatggtggaggggaagttgcaaatgaagacattg
tgtggtcttggccgtattgttctcaagaaattttgtggaaaagccaactgtaatttgttc
gctcttgtttcgcgtataaggaaagcttgttcagaggaacgtatctacattgaagtgaat
gttgaccagaatgcagtccacttatttgccacttcaaataatatggatacagcccttgcg
ttggttaatggcgctctagaatttgagagaaagttcttacgtgccgaatgtattgataag
tttttgtatcatgggtctggtccttcacctatcgctttgtttgggtctggtgctgagata
aaacatttggaacttgagaaacgttccttgagtgttgaggtatgtcatgcaaacataaat
gcaattgatgacaaggagctcttaatgtttttagagaagaatacctctggtagtatctgt
gctgttcacaaatctgcaggcaatatgaaggatgaagataaggaaaggtggggcaggata
acttttacatcccctgaatttgtcaaaagagccactgaattagatggacatgagttttgt
ggctcctccttgaaaattttcccttcgcagttgggaggggataaaacattttcgtacact
gatgttaaagcaaaaatttgttggcctcgtaggattagcaggggatttgccgtagttaaa
tgtgatataaaggatgtcaatgatatattgagagatttctacaaccttgcaataggggga
aggtatgttagatgtgaagttggcaaaaagagtatggacagtgttgttataaatgggctt
ggcaaagacctctcggaagctgaaatactggatgtgctaagaactgctacaaacagaagg
attttggattttttcttggtgagaggggatgcggttgaaaacccaccatgcagtgttttg
gaagaggcactcttgaaggcaatttacccctctttgcccaaaaggaacccgcactttagt
tcttgccgagttcaggtgtttgtacctgggcctaaggatgcctttatgacagctttaatc
agtttcgatggaagattgcatttagaggcagcaaaagctttggagcatattgaaggaaag
gtgttacctggatgtctatcatggcaaaagataaagtgccagcggtcgtttcaaagctcc
ttgatatttccagcaccagtgtttcgtgtgattagggaacaactggatggagtacttgca
aggttcaagaatttaagaggtcttgagatcgaggaggacaggacatttaatggttcccac
cgagtcaagataactgcgaacgccacaaggacagtggcagatgtcagaagacctctggaa
gaactattgagagggaaaaccattgagcatgacagtctcactcctgcagttctccagctc
atgatgtccaaggatggctttaatcttaaaaactcattggagcaggagacaggaacttat
attctttttgacaggcaaaacttgaatttgcgtgtgtttggttacccaaacaaggttgct
ttggctcatgacaaggtgattcaatccctcctttctctacatgaagaaaagcagttagaa
atccatctgagagggagggatttacctcctgatttaatgaagcaagtgattaagaacttt
ggaccggatctgcatggactgaaagaaagggtacctggagtagatcttaagctcaacata
agacgccatgtaatcagtcttaatggtaggaaggagttgaaaaccagggtagaggaaata
atttttgagattgctcgttcatgccatcatttggtttggacgtttgctaatgatggtcct
aattgcccgatttgcttgtgcgaggttgaggatccattccagcttgaaggctgtggtcat
ttgttctgccggttgtgtctggtggaacaatgtgaatctgctattaaaaaccaaggcacc
ttcccaatatgttgtactcacaaggactgtggagatgtcatcctgcttacagatctgaga
tctctcttattcagtgataagttggaggaacttttcagggcttctttgggagctttcgtg
actacgagtgggggaacttacaggttttgcccttctccagactgcccctcaatttatcga
gttgcagatcctgggactgctggcgagctatttgtttgtggggcgtgttattcagagaca
tgtaccaggtgccacttagagtatcatccttacctttcatgcgagagatataaagagttc
aaggaagatccggattcatctctgatggagtggcgcagaggcaaggacgacgaagttaag
agttgcttggcgtgtgggcatgtaattgagaaggtggatgggtgcaaccatgtggagtgc
aagtgtggaaagcatgtgtgttgggtttgcttagagttcttcggtggtagtgatgaatgt
tatagccatttgagaaatgtgcacacgactataatataa
DBGET
integrated database retrieval system
