Vigna umbellata (ricebean): 124841213
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Entry
124841213 CDS
T09662
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
124841213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
vum04131
]
124841213
Membrane trafficking [BR:
vum04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
124841213
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
Clathrin
TPR_Vps41
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
Beta-prop_WDR3_1st
Beta-prop_EML_2
ANAPC4_WD40
Beta-prop_WDR5
WD40
WD40_CDC20-Fz
WDR55
WD40_Gbeta
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_THOC3
Beta-prop_Aladin
zf_RING_Vps8
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
124841213
NCBI-ProteinID:
XP_047173404
LinkDB
All DBs
Position
Unknown
AA seq
1916 aa
AA seq
DB search
MEPDVRSLLNSASSSASSSDADDDAPHRTIDEILNDCDTSSSSSSPPSSPSHSLSPLTNS
HPQNPTLQPKPLQPALDSISRLKPAEFSDRTRVSRPFSSLLQGVRSNAKPGAALAAAAAA
SRSVPTPHAAAIISRRKSAAAISTELSSTAAASDDYSDVSSKGELGELSEKYDPVPQRIE
TQSSESASVNGEHVESDADIAIDLKAGSAADNQVHIDTDNDSRDGDDDGNGNYNDSSIVS
EENRNLDEVDGYHGKDMNSSTFDEDNNDRDLDGNDGSEKRITAMDSAVETEETVDNGESS
VDHVKNELSGGGSDDGSSLGDVSELVEERLEELESRRASKRAEKKREFSMKPLELAEKLE
KKRASTGLHLEEGAAAQPMRLEGVRRGSTTLGYFDVDADNAVTRAISSQTFRREQGSARA
VAVHANYIAVGMSKGLIVVFPSKYSIHHADSSDGKMLMLAMQGDRLRAPVTSMSFNQQGD
LLLAGYGDGHLILWDVQKGVVAKVISGEHTAPVVHTLFLGQDPQNTRQFKAVTGDCKGLV
LLHIISVVPLFSRFSIKTQCLLDGQSTGLVLSASPLLFDDFSGSASPFSQGNTSTPASSI
SSMMGVVGGDAGWKLFNESSSLLEEGVVVFVTHQTALVVRLSPTLQVYAQLSRPDGVREG
SMPYTAWKYMTQTHSSTENMSAEASERVSLLAIAWERKVLVAKLVKSELKVYGNWSLEGA
AIGLAWLDDQMLEVQTSSGQLYLFSKDGTVIHQTSIAIDGIGGDDLVSYHTHFINVFGNP
EKAYHNSVAVRGASVYVLGPTHLLISRLLPWKERISVLRKAGDWMGALNMAMTLYDGHAH
CVIDLPRTLDAVHEAIMPFLVELLTSYVDEVFSYISVAFCNQIGKVDPSNNSNSRSNSVH
CEIKEQYNRVGGVAVEFCCHIKRMDILFDEIFSKFVGVQQRETFLELLEPYILKDMLGSL
PPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYVFNKGLD
DFRAPLEELFVVLQNSQKESATALGYRMLVYLKYCFTGLPFPPGRGTIPPTRLPSLRREL
VXFLLKDSCTSKSHTISDSESRGPHPNLYLLLKLDTEATLDVLRCAFIEDEIPNACSSSP
DSANKPIEEAKKEDKATETQNALVQNTVDALIQIIDTNIVQTDTTFSSGEDGLIKEWSSK
DIGYLFEFIAYYVATQRAKISKGVLCQILEYLTSDSHSSTDISVYCSTPKNREKQVLALL
EVLPKSDWDPSFVLDLCERAKYHQVCGLIHSFRHEYVAALDSYMNDVDEPIHTFSFINKT
LSQLTDNEHVAFRSAVILRIPELVELSREGAFHVVISHFSEESFHIITELHSHPRSLFLY
LKTLIEFHLFGTLDLSNLSKDDTMNPLNGRQVKDHSEGVRDYLENISNFPKFMREKPIHV
PDDLIELYLKLLCQYEGSSVLKFLEMFDSYRVEHCLRLCQEYGIIDATAFLLERVGDVGK
ALSITLSDLNDKFVKLDAAVEAVVLNRSRVGSSHVEVFDTVLRTKEGSDIQDLLRACIGL
CQRNTPRLNPEESEAHWFKLLDSFCDPLIDSNVKGAYESKNHFGMLAGSADSQQDKDAYK
SSWKISKSRNGHILRKLLSQFIKEIVEGMIGFVHLPTIMSKLLSDNGSQEFGDFKLTILG
MLGTYGFERRILDAAKSLIEDDSFYTMSLLKKGASHGYAPRSLVCCICNCLLTKNSGSSG
IRIFNCGHAIHVQCEVSEIEASSRGSSSGCPLCMPGKKSQQSRNKSIIATNGLVNKFSSR
RQYPHGSTIHSHDSDLTENMYGQQQISRFEILSNLQKNQRFMQIENLAQLKLAPPAVYHE
KVNKVANFLTGESSNNSSAIEKQSRNKQNRELRVKGSSIRFPLKSSIFGKEKTNKR
NT seq
5751 nt
NT seq
+upstream
nt +downstream
nt
atggagcccgacgtccgttcactccttaactctgcctcctcctccgcttcttcctccgac
gccgacgacgatgctccccaccgcaccatcgatgaaattctcaatgactgtgacacttct
tcttcctcaagctctcccccttcctctccctctcactctctctctccactcaccaattcc
catcctcaaaaccccactcttcaaccaaaaccactccaacccgcactcgattcaatttct
cggctcaaaccagccgaattctccgaccgcacacgcgtttcgcgtccgttctcttctcta
ctacagggcgtgcggtccaatgcgaagccgggcgccgccctcgcggctgctgctgcggcg
tctcgatccgttcctacgccgcacgcggcggcgatcatttccaggaggaaatctgcggct
gcgatcagcactgagttgagttcgaccgctgccgctagcgacgattattccgatgtttct
tctaaaggcgaattgggcgagcttagtgagaaatacgatcctgtgccgcagagaatcgag
actcagtctagtgaaagtgcttctgttaacggcgagcatgttgagagtgatgcagatatt
gccattgatttgaaggctggtagtgccgctgacaatcaggtgcatattgatactgataat
gacagtagggatggcgatgatgatggaaatggcaattataatgattcttctatagtgagt
gaggagaataggaatttagatgaggttgacggttaccatgggaaggatatgaattcttca
acgtttgatgaagataataatgatcgtgacttggatgggaatgatggttctgaaaagaga
atcacagctatggattcagctgtggaaacagaagaaacggtggataatggtgaaagctct
gtggatcatgttaaaaatgagctgagtggtggcggtagtgacgatggtagttcattgggt
gatgtttcagagctagtggaagagaggcttgaggaattggaaagcagaagggcttctaag
agagcagagaagaaacgagaattttcaatgaaaccacttgaattggctgaaaaattggag
aaaaagcgagcttcaactggtttgcatttggaagagggtgctgctgcccagccaatgaga
ctcgagggcgttcgaagagggtccacgacgttgggatactttgatgttgatgctgataat
gcagtcaccagggcgatttcgtcccaaacattcaggcgtgagcaaggttctgcccgagcc
gtggcagttcatgctaattatattgcagtaggaatgtcaaaagggctcattgttgtcttt
cccagtaaatattccattcatcatgctgatagttctgatggaaagatgttgatgcttgct
atgcaaggtgatcggttgcgtgctccagtgacatctatgtctttcaatcaacaaggagac
cttcttttagctggttatggtgatggtcatcttatcctgtgggatgtacagaaaggggtt
gtagcaaaagttattagtggtgagcatacagcaccagtagtacataccttatttctaggt
caagatcctcagaatactcgtcaatttaaagcagttactggtgattgtaagggtctggtt
ctcttgcacattatctcggttgttcctttgtttagtagattctccatcaaaactcagtgt
cttcttgatggacaaagtacaggcttggtgctttcagcttcaccactccttttcgatgac
ttcagcggaagtgcttcgcctttttctcagggaaacacctcaaccccagccagcagtata
agcagcatgatgggtgttgttggcggagatgcaggttggaaactcttcaacgaatcctct
tctttgttggaagaaggtgtggttgtatttgtaactcatcaaactgcattggtggtacgg
ctgagccctacattgcaagtctatgctcaactctctaggccagatggggttcgggagggg
tctatgccgtatactgcatggaaatacatgacacaaacacatagttctactgaaaatatg
tctgcagaagctagtgaaagagtttcattgcttgcaattgcttgggaacgtaaggttctg
gttgcaaagttagtgaaatcagaactaaaagtatatggaaattggtctctcgaaggtgcg
gctataggtctagcgtggttggatgatcagatgctggaagttcaaacttcaagtggacaa
ctgtatttattttccaaggatggaactgtgattcaccaaacaagtattgccatagatggt
attggaggagatgatctagtctcttatcatactcacttcatcaatgtattcggaaatcct
gagaaagcttatcataactctgttgctgtaagaggagcttctgtttatgtacttggtcca
acacatcttctcatttctcgtcttctaccttggaaagagcgtatttctgttttgcggaaa
gcaggtgactggatgggtgccttgaacatggcaatgactctttatgatggccatgctcat
tgtgttattgatcttcctagaaccttggatgccgtacatgaggccataatgcccttcttg
gtggagttgcttacatcatatgttgatgaagtgttctcctacatttcagtggcattctgc
aaccaaataggtaaagtggacccatccaataattcaaatagtagaagcaattcagtacat
tgtgagataaaggagcaatacaaccgtgttggtggggttgctgttgaattttgttgtcat
atcaaacggatggacattctttttgatgaaattttctccaagttcgtgggtgttcaacaa
cgagaaacatttttggagcttctggagccatatattttgaaagacatgcttggatctcta
cctcctgagatcatgcaagaattggttgagtattatagtaccaaagggtggttacagcgt
gttgagcaatgtgtacttcatatggatatatcatccttggattttaatcaggtcgtcagg
ttatgccgggagcatggactttatagtgccctggtttatgtcttcaataaaggattagac
gattttagggctcctctggaggagctgtttgttgtcttacaaaatagccaaaaggaaagt
gctactgcacttgggtatagaatgctggtttatctcaagtactgctttacaggtcttccc
tttccaccaggccgtggaactattcctcccacacgcttaccttctcttagaagagaactt
gtgtagtttttgttaaaggactcctgtacttcgaaatctcacaccatttcagattctgag
tccagaggaccccacccgaatctttatcttcttttaaagttagacactgaagctacctta
gatgtcctcagatgtgcttttattgaagatgaaattccaaatgcctgctcatcttcacca
gattcagccaataaacctatagaggaagcaaaaaaagaagataaagctactgaaactcaa
aatgctttggttcagaacacagttgatgcactcattcaaataattgatacgaatattgtt
cagacagatacaacctttagtagtggtgaagatgggttgataaaagagtggtcttcgaag
gacataggttatctatttgagttcattgcatattatgttgctacccaaagagctaaaatt
tcaaagggtgtactgtgtcaaatattggaatatttgacatctgatagtcactcctctacc
gatatttctgtttattgctcaactccaaaaaacagagagaagcaagtgctagcactgttg
gaagtacttcctaagtcagactgggatccttcatttgtgctagatctatgtgaaagagcc
aaatatcatcaggtttgtggattgatccatagtttcagacatgaatatgtggctgcactg
gatagttatatgaatgatgtagacgagcctattcataccttttcctttattaataaaaca
ttatcacagttgactgacaatgagcatgtagcatttcggtcagcagtcatattgcgaatt
cctgaattggttgaactaagcagggagggtgcattccatgtggttatcagtcattttagc
gaagaaagtttccatatcataactgaacttcactctcatccaagaagtctttttctttat
ttaaagacgctcattgagtttcacttatttggcaccctagatttgtctaatttgagcaag
gatgacactatgaatcctcttaatggaaggcaggttaaggatcactctgaaggagttaga
gattacttagagaatatatccaatttccccaagttcatgcgggaaaaacctattcacgtg
cctgatgatcttattgagctttaccttaagttattatgccagtacgaaggtagttcagtt
ctcaagtttctggaaatgtttgatagctatcgagttgaacattgtttacgtctctgtcaa
gaatatggcattatagatgcaactgcgttcttattagaaagggttggtgatgttggtaaa
gctctttcaattacactttctgatcttaatgataaattcgttaagcttgatgctgctgtg
gaagctgtagttttaaaccgtagcagagttggttcttcacatgtggaagtattcgacact
gttttaagaacaaaggagggaagtgacatccaagatctattgcgtgcctgtattggtctg
tgtcagaggaacacccctcgtctgaatcctgaggagtcagaagcgcattggtttaaatta
cttgattcgttttgtgacccattgatcgattcaaatgttaaaggagcatatgaaagtaaa
aatcattttggaatgttagctggatcagcagattcacaacaggacaaggacgcctataaa
agcagctggaaaatttcaaagtcccggaatggtcatatcttgagaaaattgctatcacag
ttcattaaagagattgtagagggaatgattggttttgttcaccttccaacaatcatgtct
aagcttctgtctgataatggtagtcaagaatttggtgattttaaacttacaatattggga
atgctgggaacatatggctttgaaagaagaattctggatgctgccaaatcgttgatagaa
gatgactcgttctatacaatgagtttactcaagaaaggggcctctcatggatatgccccc
aggagtctcgtgtgctgtatttgtaattgccttcttacaaagaactctggtagctctgga
attcggattttcaactgtggccatgcaattcatgtccaatgtgaagtttcggaaattgag
gcatcaagcagaggatcttcgtcgggatgccctctatgcatgcctggcaagaaatcccag
cagtcccgaaacaaatcaatcattgcaactaatggcttggtcaacaaattctcatcaagg
cgccagtacccccatggaagtaccatccattctcatgacagtgatttgacagagaatatg
tatgggcagcaacagatatcacggtttgagatcttgagcaacctgcagaaaaatcagaga
tttatgcaaatagaaaacttggctcagttgaagcttgccccgcctgctgtgtaccatgaa
aaggtaaataaagttgcaaactttctgacaggcgaaagtagcaataattcttctgctatt
gagaaacaaagtagaaacaagcaaaaccgggagctaagagttaagggttcatcaatccgg
tttcctttaaaatcaagtatatttggcaaggagaagacaaataagcggtga
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integrated database retrieval system
