Vigna umbellata (ricebean): 124841860
Help
Entry
124841860 CDS
T09662
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124841860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vum03041
]
124841860
03009 Ribosome biogenesis [BR:
vum03009
]
124841860
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124841860
Spliceosome [BR:
vum03041
]
Complex A
U2 snRNP components
U2 related factors
124841860
Complex B
124841860
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
124841860
Ribosome biogenesis [BR:
vum03009
]
Eukaryotic type
90S particles
Helicases
124841860
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
ResIII
SRP54
T2SSE
ABC_tran
AAA_30
AAA_7
Flavi_DEAD
FtsK_SpoIIIE
AAA_33
TsaE
PhoH
AAA_29
Motif
Other DBs
NCBI-GeneID:
124841860
NCBI-ProteinID:
XP_047174181
LinkDB
All DBs
Position
Unknown
AA seq
721 aa
AA seq
DB search
MGTERRRKLSLFDVVDDTVGKMAKSNGGFVGNNLINRWNGKPFSQRYHDILEKRKTLPVW
HQKEEFLQVLKDNQTLILVGETGSGKTTQIPQFVLEAVDIESPDKRRKMMIACTQPRRVA
AMSVSRRVAEEMDVNIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVI
ILDEAHERTLATDVLFGLLKEVLRNRPDMKLVVMSATLEAEKFQGYFNGAPLMKVPGRLH
PVEIFYTQEPERDYLEAAIRTVVQIHKDEPPGDILVFLTGEEEIEDACRKISKEISNLGD
QVGPVKAVPLYSTLPPAMQQKIFEPAPPPLKEGGQPGRKIVISTNIAETSLTIDGIVYVI
DPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQ
TYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTK
LGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAKARF
GHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKAADNVRQQLVRIMARFNLKLCS
TDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYN
EYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLEKLYKKREKEKEEARSR
K
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaggaggaaactgagcttgttcgacgtggtggacgacactgtcggt
aagatggccaaatcaaacggcggattcgtcggtaacaacctcatcaaccgatggaacggg
aagcctttttcgcagaggtatcacgatattttggagaagaggaagaccctccccgtctgg
caccagaaggaggagttcttgcaggttttgaaggataaccagactctcattctcgttggt
gaaactggtagtggaaaaaccactcagattcctcagtttgtgttggaagctgtggatata
gaaagccctgataaacgtaggaagatgatgattgcgtgcactcagcctcggagagtggct
gcgatgtctgtttccaggcgtgtggctgaggagatggacgtgaatattggagaagaggtt
ggttacagcatcagatttgaggattgcagtagcgccagaacagttttgaagtatctcaca
gatggtatgcttttgagagaagcaatgacggatccccttttggaacgatacaaagtaatt
attcttgatgaggcacatgagaggactttggctaccgatgtgctgtttggtcttcttaag
gaagtgcttagaaatagacctgacatgaagttggttgttatgagtgcaactcttgaagct
gaaaagttccagggctactttaatggggcccctcttatgaaggttcctggaagactacat
ccggtggaaatcttctatactcaggagccagagagggattacttggaggctgctattagg
actgtggtgcagatacacaaggatgaacctcctggagatatacttgtttttctcactgga
gaggaagagattgaggatgcatgccgcaaaatttcgaaagaaatatcaaatttgggagac
caggtgggtcctgtgaaagcagttcccttgtattctacccttcctcctgctatgcaacag
aagatttttgagccagctccacctccactaaaggagggagggcaacctgggaggaagatt
gtaatatcaacaaatatagcagaaacttcgttgacaattgatggtatagtctatgttatt
gaccctggatttgctaagcagaaggtttataaccctcgagtccgtgtcgagtctttgttg
gtatctccaatatcaaaggctagtgcccatcagagatctgggcgtgctggaagaactcag
ccagggaaatgttttagactttatactgaaagaagtttcaataatgatcttcagccacag
acctaccctgaaatcttgagatctaatctagccaacactgttcttaccttaaagaaactt
ggtatagacgatttagtgcattttgatttcatggaccctcctgccccagagaccttaatg
cgtgcactggaagtgttgaattacttgggtgctctggatgatgatggcaacttaactaag
ctgggtgagattatgagtgaatttcccttggatccacagatgtcgaagatgcttgttgtc
agtcctgaattcaactgttcaaatgagattctttctgtctctgccatgctatcagtaccc
aattgctttgtccggcctagggaggcacagaaagctgcggatgaagcaaaagctaggttt
ggacacattgatggagatcacctcacgctcttgaatgtataccatgcgtacaagcaaaat
aacgaggacccttcttggtgctacgataacttcgttaatcacagggcgttgaaagcagcc
gataatgttagacaacaactagtgcgaatcatggctcggtttaacctcaagttatgcagc
actgattttaatagccgtgactactatgtcaacataagaaaggcaatgctagcgggatat
ttcatgcaggtggctcatctggagcggacaggacattacctgacggtgaaagacaaccag
gtggtgcacttgcatccatcaaattgcctggaccacaagccggagtgggtaatttataat
gaatatgttcttaccagtcggaattttattcgaactgtcacagatatacgtggagaatgg
ttggtggatatagccccacattactatgatctatcgaattttccacaatgtgaagcgaag
cgtgttcttgaaaagctgtacaagaagcgagagaaggaaaaagaggaagccagaagtcgt
aagtga
DBGET
integrated database retrieval system
