Vigna umbellata (ricebean): 124843528
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Entry
124843528 CDS
T09662
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124843528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124843528
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
124843528
mRNA cycle factors
Common to processing body (P body) and stress granule
124843528
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
124843528
NCBI-ProteinID:
XP_047176242
LinkDB
All DBs
Position
Unknown
AA seq
975 aa
AA seq
DB search
MMLVEMDKMSAPSSRERAQRLYEKNLELENKRRRSAQARVPSDPNAWQQMRENYEAIILE
DHAFSELHNIEYALWQLHYKRIEEFRAYFSAASLSSSSANSSQGVKGPARPDRITKIRLQ
FKTFLSEATGFYHDLITKIRAKYGLPLGYFEDSENRIVMEKDGKKSAEMKKGLVACHRCL
IYLGDLARYKGMYGEGDSKNREYTAASSYYLQAASLWPCSGNPHHQLALLASYSGDMLVT
IYRYFRSLAVDSPFTTARENLIVAFDKNRQSYSQLSGDAKAHAVKESSGRVTGKGRGKGE
PKLATRGTGVDASPKIGASSIQETYIYFCTRFVRLNGILFTRTSLETFPEVLVAVVTDLR
ELLSSGQDEELNFGTDAPENALGIVRIVCILIFTVYNVNKESEGQSYAEIVQRAVLLQNA
FAAAFELMGYIIERCTELRDPSSSYLLPGILVFVEWLACYPDLSAGNDVDESQTNLRSEF
WNRCVSFLNKLLSVGPMSIDDEEETCFNNMSRYEEGETENRHALWEDFELRGFVPLLPAH
TILDFSRKHSIGSDGDKERKARVKRVLSAVKALSDVVKVDKNVIYFNSKAKKFVIGVEPQ
TVDDFVLPTYSEMRSATELVQEKPADKSEMEIVQSNQHQQMEGDEDDEVIVFKPIVSETR
ADVVASSWAPNVGLEPALKASGGDLKFHVNSTPNPLMNLGHQTLSVPGSGMVPQHMQPVQ
LQTSRWLEEEISLANNFKGLGFFENGHAMKPGVQEAIAFSNHVSLPIPNQQSIGAADTNG
MFYGISKALDSVLPSKVDAIASSGVVTDNLAVKASALPVGSRKAPVSRPTRHLGPPPGFS
HVPPKQGVESSVSDSISGNPMMDDYSWLDGYHFRSSTKGLGSNGPLNYSHSNSVQVSNSG
FSPNVSFPFPGKQVHSLPLHAEKQNGWQDYQNYDLLKSHHDQQLQPQQLTAGNQQFSPLP
EQFQGQSIWTGRYFV
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgatgttagtagaaatggataaaatgtctgctccttcatcaagggagcgtgcacaacgc
ctctatgaaaagaaccttgaattggagaataagcgtcggaggtcagctcaggcgcgggtt
ccatcagatccaaatgcttggcaacagatgcgtgagaattatgaagcaataattcttgag
gaccatgctttctctgagctgcacaatattgaatatgcactctggcagttgcattataag
cggattgaggagtttagagcatacttcagtgctgcttctctttcttcttcaagtgcaaac
tcatctcagggagtgaaaggccctgcacgaccggaccggataactaaaataagactacaa
tttaagactttcctttcagaagcaactggattttaccatgaccttattacaaagatcaga
gctaagtatggtcttcctctcggttactttgaggattcagagaatcggattgtcatggag
aaagatggaaagaaatctgctgagatgaagaaaggtttagtagcttgccatcgttgtctg
atatacttgggtgatcttgctcgttataaaggtatgtatggtgaaggtgattcgaaaaac
cgggagtacacagcagcttctagttactacttgcaagctgcatctctttggccttgtagt
ggaaacccccatcaccagcttgctttgttggcttcatattctggggatatgctggtgacc
atatatcggtattttcgtagtctggctgtagatagtcccttcacaactgcaagagaaaac
ttgatagttgcatttgacaagaatcgtcaaagttactctcaactttctggtgatgctaaa
gctcatgcagtcaaggaatcttctgggcgggtaacaggtaaaggaagaggaaaaggggaa
ccgaaacttgcaacaaggggtactggtgttgatgccagtcctaaaataggagcatccagt
attcaggaaacttatatatacttctgcactcgctttgtccgtctaaatgggatcttgttt
acacgcactagccttgagacttttcctgaggttcttgttgctgtagtcactgacctgcgc
gagcttctgtcttctgggcaagatgaagagctcaattttggaacagatgctcccgaaaat
gcacttggcattgtcagaattgtttgcattctaatatttacagtttataatgtgaacaag
gaatctgaaggtcaaagttatgcagaaattgtacagcgtgctgttctgcttcagaatgca
tttgctgctgcttttgaattgatgggttacataatagagagatgcacagagttgcgtgat
ccttcttctagttatcttttaccaggcattttggtttttgttgagtggttagcttgttat
ccagatctttctgctggcaatgatgtggacgaaagtcagacaaatttgagatcagaattt
tggaatcgatgtgtatccttcttgaataagctgctttccgttgggcctatgtctattgat
gatgaagaggagacttgctttaataacatgagcaggtatgaggaaggggaaactgaaaac
cgacatgctttgtgggaggactttgagctaaggggatttgttccacttcttcctgcacat
accatcttggatttttcaaggaagcattctattggaagtgatggtgacaaggaaagaaaa
gctcgagtcaaaagggttttatctgcagtgaaggctttatcagatgttgttaaggttgat
aaaaatgtgatatattttaattcaaaggcaaagaaatttgtaattggtgttgagcctcaa
actgtagatgattttgttcttcccacctactcagagatgcggagtgcaacagagctagtg
caagaaaaacctgctgataaatcagagatggaaattgttcagtcaaaccagcaccagcaa
atggaaggagatgaggatgatgaggttattgtttttaaacctatagtgtctgagacacga
gctgatgtggttgcctcatcatgggcacccaatgtgggattggaacctgctctaaaagca
tctggaggggatttaaaatttcatgttaattctactcctaaccctctaatgaatctaggt
catcaaactttatctgttcctggtagtggtatggtgcctcaacacatgcaaccagttcag
ctacagacatctaggtggttagaggaggaaatttctctcgctaacaattttaaaggtctt
ggtttttttgagaatgggcatgcgatgaaacctggtgtacaagaagctattgccttttcc
aaccatgtttcacttcctattcctaaccaacaatctataggtgctgctgataccaatggc
atgttttatggtatctcgaaagctttggactccgtattgccatcaaaagttgatgctatt
gcatcttcgggagttgttactgataacttagctgtgaaagcgtcagctttgccagttggt
tctagaaaagccccagtcagtcgaccaaccaggcaccttggacctcctcctggtttcagt
cacgttcctcccaaacaaggtgttgaatcctctgtttcagattcaattagtgggaatcca
atgatggatgattacagttggttggatggatatcattttcgttcatcaaccaaaggatta
ggatccaatggtcctctcaactactctcattcaaattctgtgcaagtcagtaatagtggc
ttcagtcctaatgtcagctttccttttcctgggaagcaagttcattctctgcctcttcat
gcagagaaacaaaatggttggcaagattatcagaattatgatcttttaaaatcacatcat
gatcagcagctgcagccacagcagctcacagcaggaaatcagcagttttctcctctgcct
gagcaatttcaaggacagtcaatctggacaggtcgttactttgtgtga
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