Vigna umbellata (ricebean): 124845151
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Entry
124845151 CDS
T09662
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03015
mRNA surveillance pathway
vum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124845151
09123 Folding, sorting and degradation
03018 RNA degradation
124845151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124845151
03041 Spliceosome [BR:
vum03041
]
124845151
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124845151
mRNA cycle factors
Stress granule specific factors
124845151
Spliceosome [BR:
vum03041
]
Complex C
Other components
Complex C specific factors
124845151
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_occluded
RRM_10
RRM_RdRP1_2
DUF4875
Motif
Other DBs
NCBI-GeneID:
124845151
NCBI-ProteinID:
XP_047178169
LinkDB
All DBs
Position
Unknown
AA seq
621 aa
AA seq
DB search
MAQVPDNDSSEETNSRFHTALYVGDLDETIDESQLFIIFDHVAKVLSVRICRDYATGKSL
GYAYVNYSSRYNAAKAIKELNFIPVNGKTIRVTYSNRDPSVRKSGRANLYVKNLAPSIYH
KALYDLCSSFGNILSCTVATDASGQSKGYGFVQFESEASAGEAIEKLNGTLLKDKKIYMG
PFVSKQDRVNSDANFSNVYVKNLSDTITDAELQNIFGEYGDITSAVVMRHTDGRSKGFGF
VNFANADNAARARDGLDGQTYHGKTWCVRRAQKKTERERELTEQYDQNRGIFSRRQGRNL
YIKNLDGRIDDDTLKKIFCEFGIIISAKVMRDANGRSKGVGFVAYSSREAANQAIVLMHG
RVVAGKSLYVAFAQKRAERRAMLEAHFSQNRAAPPAPFPEPQFPMYPIRAPALGSRNLNS
QTHQTLISQEELDYHLQNLPRLEMATGPPFSFLMPQRGPPRPRGHRPPGLGQPLASHQQV
LFRIPLVIALYFPFSTSDVDTCYCGFQMIPRGNFFQGPRRPNVQNSEMVPFNLVQPVPPQ
TLASAVANAPPVEQRNVLGEILFPLVQRLVHNAAPKVTGMLLELDQAEVLHMIQSAGALE
EKVAEAIAVLRRHAEERSNRR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagttcctgacaatgatagcagtgaagagacgaattccaggttccacacggcg
ttgtacgttggggatcttgacgagaccatcgacgagagccagctctttattatcttcgat
catgttgcaaaagtcctttccgttcgaatttgccgcgactacgcaactgggaagtccctt
ggttacgcctacgtgaattacagtagccgttacaatgccgctaaagcaataaaagagcta
aatttcattccggtgaatggcaaaaccattagggtaacgtattctaatcgggaccccagt
gttcgtaagagtggtagagctaacctttatgtaaagaatttggctccgtcaatctatcac
aaggctctatacgatctctgttcgtcttttgggaatattctatcttgcacggttgcaacg
gatgcttctggccagtctaaaggttatggttttgtgcagtttgagagcgaagcatctgca
ggagaagcgattgaaaagttaaacggcacgctgctcaaagataaaaagatctatatgggt
cctttcgtgtcaaagcaggacagagtgaatagtgacgcaaacttttcaaatgtttatgtt
aaaaacctgtcagacacaataacggatgctgagttgcagaatattttcggagaatatggt
gatattacaagtgctgtagtgatgagacatacagatggtagatcaaaaggttttggtttt
gtgaattttgcaaatgcagacaatgctgctagagctcgggacggtcttgatggacagacc
tatcatggtaagacttggtgtgttagaagagcccagaaaaaaactgaaagggagcgtgaa
ctgacagagcaatatgaccagaatagggggattttctctcgtaggcaaggtagaaacttg
tatataaagaacttggacggtaggattgatgatgacactcttaagaaaattttctgtgag
tttggtataataatctcagccaaggttatgagagatgcaaatggaagaagtaaaggagtt
ggatttgttgcatactcaagtcgggaggcagcaaatcaggctattgtgttgatgcatggt
cgagtagttgcaggaaaatctctatatgttgcctttgcacagaaaagggcagagagaaga
gcaatgttagaggcacatttttcacaaaatagggctgctccaccagcaccttttcctgaa
cctcaatttccaatgtatcctatacgggctcctgcgctaggatcacgaaatttaaatagc
caaacacatcaaactttaatatcacaagaagaacttgattaccacctgcagaatcttcct
cgcttagagatggcaactggtcctccattttcattcttaatgcctcagcgtggacccccg
cggccaagaggacaccgaccaccaggtcttgggcaaccgctcgcgtcacaccagcaggtc
ttattccgtattcctttggtcattgcattgtattttccattctctacttctgatgtggat
acttgttactgtggatttcagatgattccacggggaaatttttttcaaggtcctcgtcgc
cccaacgtgcaaaatagtgaaatggtcccctttaaccttgttcagccagtgccacctcag
accttggcatcagccgttgccaatgctcctcctgtagagcagaggaatgtgcttggtgaa
attttattcccgttagtgcaaaggctggtgcataatgcagcaccaaaggttactggtatg
cttttagagctggaccaggctgaggtgttacatatgattcagtcagcaggtgctctggag
gaaaaggttgcggaggccatcgctgtactgagacgacatgcagaagagcgatcaaacagg
cgctga
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