Vigna umbellata (ricebean): 124845409
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Entry
124845409 CDS
T09662
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124845409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vum03041
]
124845409
03009 Ribosome biogenesis [BR:
vum03009
]
124845409
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124845409
Spliceosome [BR:
vum03041
]
Complex A
U1 snRNP components
U1 related factors
124845409
Complex B
124845409
Ribosome biogenesis [BR:
vum03009
]
Eukaryotic type
Pre-60S particles
Helicases
124845409
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
124845409
NCBI-ProteinID:
XP_047178460
LinkDB
All DBs
Position
Unknown
AA seq
1180 aa
AA seq
DB search
MTTAESAPAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPAPVTPPLP
APVASAPNLAPIPVTHTMQVGGMGPQHGQPLMQGQPSQQQVGHLAQQHGQSMLPQQQQQS
PHMVQTTQQNPSQGAQSVPQQNSLMPQSVPQPGLHQARQQMMQPQGQQMLQQPQGQQIQH
QIPPHAIHSQHFGQGMPQDHGSHIAPPQVHQFPTQNMHYMSYQQNIITPRQPNSQHIQPN
TVSPGQPNPQQVQHNMHAQPFENQQTTFPKVEEAEFKNGSQVGLSPSQYPPRSTLPAQNN
QNLPPDTAFDQMPNVGVNAGQPQQFRTALSGSVQKSPSAMPLQQGGSVLYYQHGPNFHKQ
MSPGMMHGHPSNVHPAGQKMSQEDNSRSREGNEYYYNSNKDMSTMGRRQPDMTQIPVPRN
QQDMRIGNTPFQNVMPSGNGSGIAGNAMPSMFVPPMGGPSPLSNNALMRPSYMGSSDASD
LSPAEIYCQQHEVTATGGDIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVAL
QGRDIVAIAKTGSGKTLGYLIPAFILLRQRHNNSLNGPTVLVLAPTRELATQIHNEVIKF
GRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEA
DRMLDMGFEPQIRKIVDEIPARRQTLMYTATWPKEVRKIASELLVNSVQVNIGSADELAA
NKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARNIGRTFGAAAIH
GDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRT
GRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMALRGPSNFGKERGGMSRF
DSGGGRWETGGRGSMRDGGFGGRGGMRDGGFGGRGGGMRDGGFGGRGSGMRDGGFGGRGG
GLRDGGFGGRGGGGFSGRGGPRDGAGGRGDFFPGRGNRGRGSSGLRGGHGGWGRGERGMD
DRGQGRGRGRFDNRRDVSYKSRGRSYSRSPERVRTWDYSSSSRSRSRSRSWSRDRSRSRS
RSRSWSRGRSYSRSRTRSRSRSRSYDRRDRSVQQLPDRKDRPHEVGTSDPRMLPLSPGPG
KQENSSLGSEQGQQQSVVGSSDPGNPEAVPDLSHESASGV
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccgcggagtcagctcctgcggggcttggccctagatatgcacccgatgaccct
actcttccacaaccttggaagggattgattgatggcagcactggtttgttgtattattgg
aatcccgaaactaatgttacccaatatgaaaaacctgccccagtaacaccacccttgcct
gcacctgtggcttctgcaccgaacttggcacctatacctgtgactcacacaatgcaggtt
ggtgggatggggccgcagcatggacagcccttaatgcaagggcaaccctcgcaacagcag
gtaggtcaccttgcccaacagcatgggcaatctatgctacctcagcaacagcagcagagt
ccccatatggtgcaaaccactcagcagaacccctctcagggtgctcagtctgtgccgcag
cagaactcactgatgccacagtcagtgccgcagccagggttacatcaagccagacagcaa
atgatgcagccccaggggcagcaaatgttgcagcagcctcaaggacagcaaattcaacat
cagataccgccacatgcaatccattcccagcattttgggcaaggaatgcctcaggatcat
ggctcacatattgcacctccacaagtacatcagtttcctacccaaaacatgcactatatg
tcatatcagcaaaacatcattacacccaggcaaccaaactctcaacacattcagccaaac
actgtctcacctgggcaacctaacccccaacaggttcagcataacatgcatgctcaaccc
ttcgaaaatcaacaaacaacatttccaaaggtagaggaagcggagtttaaaaatggaagc
caggttggactttcaccatcccagtatccgccgaggagtaccttgcctgctcagaataat
cagaaccttcctcctgacacagcttttgatcaaatgcctaatgtaggtgtcaatgctggt
cagcctcagcaatttaggactgccttatcaggcagtgtgcagaagtcgccatctgcaatg
ccgttgcagcagggtggatctgttttatattaccaacatggtcctaactttcataagcag
atgagcccaggaatgatgcatggtcatccatccaatgtccatcctgctggccaaaaaatg
agtcaggaggacaattcacgtagcagagaaggaaatgaatattactataattctaataaa
gatatgtccacaatgggtcgtcggcaaccagatatgactcaaataccagttccaagaaat
cagcaggatatgaggatcggcaatactccttttcaaaacgtaatgccaagtgggaatgga
agtggtattgctgggaatgctatgcctagcatgtttgttcctccaatgggaggaccttca
cctctttctaataatgctttaatgagaccttcttacatgggatcttctgatgcaagtgat
ctttcaccggctgaaatttactgccagcaacatgaagttacagcaacgggtggtgacatt
ccccctcctttcatgacatttgatgctactggattccctccagagatattgagagagata
tattctgctggcttctcaaatccaacaccaatacaggctcaaacatggcctgttgcacta
cagggtagagacatagtagcaattgccaaaactggctctgggaaaacattgggttactta
attcctgccttcattcttcttagacagcgacacaataattctctgaatggccccactgtc
ttggttttggctccaacacgggaacttgcaacacagatccataatgaggttatcaagttt
ggtcgatcatcacgagtctcttgcacgtgcttgtatggtggagcacctaaagcccttcaa
ctaaaggagttagatcggggagcagacattgttgttgccacacctggtcggctcaatgat
atacttgaaatgaagaaaattgacttcgggcaagtttcactacttgtgcttgatgaggct
gacagaatgcttgacatgggttttgagcctcaaatccggaagattgtggatgagattcct
gcacgcagacaaactctcatgtacacagcaacctggccaaaagaagtaagaaaaattgct
agtgaacttcttgtgaattctgtccaggttaacattggaagtgcagatgagcttgctgca
aataaagccatcacacagtatgttgaagttgtcccacaaatggagaagcagaggcgtttg
gaacagatcctcagatcccaagaacgaggttcgaaggtcataatattttgctccacgaag
aggttatgtgatcagctagctcgtaatattggccgcacttttggggctgctgcaattcat
ggagataagtctcaaggtgagagagactgggttttaagtcagttccggactgggaagtca
ccaattctggttgccactgatgttgcagctcgtgggcttgatattaaggatataagggtg
gtaataaattatgatttccccactggaattgaggactatgtgcaccgtataggaagaact
ggaagagcaggtgctactggagtgtcatatacctttttttctgagcaggactggaaacac
gctggtgatttaatcaaagttttggagggtgctaatcagcatgtgcttccagagttaaga
cagatggctttgcgtgggccatcaaactttggaaaggaacggggtgggatgagtaggttt
gattctggtggtgggcgttgggagactggtggtcgtggtagtatgagagatggtggcttt
ggtggtcgtggtggaatgagggatggtggctttggtggtcgtgggggtggcatgagggat
ggtggttttggggggcgtggcagtggcatgagggatggtggctttggtggtcgaggtgga
ggcctgagggatggaggatttggtggacgtggtggtggtggttttagtggacgtggtggc
ccgagggatggagctggtgggagaggtgatttctttcctggtaggggcaacaggggtagg
ggatctagtggtcttcgtggtggtcatggtggttggggtaggggtgaacgtggtatggat
gaccgtggacaggggcgtggacgtggccgatttgacaacagaagggatgtttcttacaaa
agtagaggcagaagttatagtcgaagcccagaaagagtccgaacatgggattatagtagc
agtagcagaagtcgtagtagaagcaggagttggagcagggatagaagtcgaagtagaagt
agaagtcgcagctggtctcgtggccgaagttacagccgaagccgtacccgcagccggagc
cggagccggagttatgacaggcgggataggtcagttcaacagcttcctgatcgaaaggat
aggccacacgaagtgggaacttctgatccaagaatgcttcccttgtctcctggtcctggc
aaacaggagaattcctctttgggaagtgagcaagggcagcagcaatctgttgttggtagc
tctgatccagggaatccagaagctgtaccagaccttagtcacgaatcagcttctggtgtt
tag
DBGET
integrated database retrieval system
