Vigna umbellata (ricebean): 124845603
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Entry
124845603 CDS
T09662
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124845603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124845603
03041 Spliceosome [BR:
vum03041
]
124845603
03009 Ribosome biogenesis [BR:
vum03009
]
124845603
03016 Transfer RNA biogenesis [BR:
vum03016
]
124845603
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124845603
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124845603
Spliceosome [BR:
vum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124845603
Complex C
U4/U6.U5 tri-SnRNP related factors
124845603
Ribosome biogenesis [BR:
vum03009
]
Eukaryotic type
Pre-60S particles
Helicases
124845603
Transfer RNA biogenesis [BR:
vum03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124845603
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
124845603
NCBI-ProteinID:
XP_047178675
LinkDB
All DBs
Position
Unknown
AA seq
989 aa
AA seq
DB search
MQIEGIVTQQPTMGSLKRKSPEEPSTSSSLPLHDCVHHVSYPPDYTHPSSPPTQTHAEPA
KKFPFTLDPFQSQAITCLENGESVMVSAHTSAGKTVVASYAIAMSLRDGQRVIYTSPIKA
LSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREVAWIVFDE
VHYMRDRERGVVWEESIVLSPKNSRFVFLSATVPNAKEFADWVAKVHKQPCHVVYTDYRP
TPLQHYIFPSGGDGLYLVVDDKGKFREDSFQKSLNALVPTTEGDKRKENGKRQKGLVLGR
VGEESDIFKMVKMIIQRQYDPVILFSFSKRECELLAMQMAKMDLNGDHEKDNIEQIFNSA
MDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSI
GLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDEKMEPST
AKNMVKGAADSLNSAFHLSYNTILNQMRCEDGDPEKLIRNSFFQFQADRAIPDLEKQIKL
LEKERESIVIEEENSLKDYFNLLEQHRSLNKEVRDIVLSPRHCLPFLQPGRLVSLDCTSS
DEDLTPVFIEDQLTWGLVINFERVKSVSDDDASVKPEDASYNVDVLTRCVVKKDKIGKKS
IKIVPLKEAGEPLVVSVPISQVNTISSLRLFIPKDLLPLEARENTLKKVLETLSRFGEKG
LPLLDPEEDMKIQSSSYKKASRRIEALESLFEKHEIAKSPLIKQKLKVLQRKQELTAKIK
SIKKTLRSSTTLAFKDELKARKRVLRRLGYATSDNVVELKGKVACEISSADELTLTELMF
NGVLKDIKVEEMVSLLSCFVWQEKIHDGAKPREELDLLFMQLQDTARRVAQLQLECKVEI
DVESFVKSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIAAAKS
IGETQLEAKFEEAVFMIKRDIVFAASLYL
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgcagattgaaggcattgtaactcagcaaccaacgatggggtcactgaagagaaagtcg
ccggaagaaccttcaacttcatcttcgctgccactgcatgattgtgtgcaccacgtttcg
tatccacccgattacacccatccttcttctccgcccactcaaacacacgcagaacccgcc
aagaagttcccgttcactctcgatccctttcagtcccaagccatcacttgccttgaaaac
ggcgagtccgtcatggtgtctgcacatacgtctgctggaaaaaccgtggtggcttcgtat
gctattgctatgtccctccgagatgggcagcgtgtcatctacacttcccctatcaaggct
ctcagcaaccagaagtacagagaattcaaggaagaattttctgacgttggcttgatgacc
ggagacgtcaccattgatcccaatgcttcttgtttggtaatgactacggaaatctggcgt
agcatgcagtacaaagggtctgagatcacaagggaggtggcttggattgtttttgatgag
gtgcattacatgcgtgatcgtgagagaggcgtggtttgggaagaaagtattgttttgtcg
ccaaagaattcgcgttttgtgttcttgtctgccactgtccccaacgccaaggaatttgct
gattgggtggcaaaggtgcataaacaaccttgtcatgttgtctatactgattaccgccca
acaccccttcaacattacatttttccttctgggggtgatggtctatatctggttgtggat
gataagggaaagtttcgcgaagacagctttcagaaatctttgaatgctcttgttcccacc
actgagggtgataagagaaaagagaacggcaagcggcaaaagggtttggtcctgggtaga
gttggtgaagaaagtgacatattcaagatggtgaaaatgatcattcagcgtcaatatgat
cctgttatactgttcagctttagcaaaagggagtgtgagcttcttgcaatgcagatggca
aaaatggatcttaatggggatcatgaaaaggacaacatagaacaaatatttaatagtgct
atggacatgctttcagacgatgataagaaactaccccaggtttcgaacatgctgcctttg
ttgaaacgtggaataggagtacatcactctggtttactcccaattctaaaggaagtgatt
gagatcttatttcaagaagggctaatcaagtgtttgtttgccacggagacattcagcatt
ggtttgaacatgcctgcaaaaactgttgttttcacaaatgtccggaaatttgatggggac
aagtttagatggatatccagtggagaatatattcaaatgagtggtcgtgcaggtcgaaga
ggcattgatgaacgtgggatatgtatcctcatggttgatgaaaagatggagccttctact
gctaaaaacatggttaaaggggcagctgatagtttaaatagtgcctttcatttaagctac
aacacgattttaaatcaaatgcggtgtgaagatggtgatcctgaaaaattgattcgtaat
tccttttttcagttccaagctgatcgtgccattcctgatcttgagaaacaaataaagttg
cttgaaaaagagagggaatcaattgttattgaagaagaaaacagtctaaaggattatttc
aatctactggagcagcatagaagtttaaataaggaggtccgtgacattgtgctatctcca
aggcactgtttaccttttctacagcctgggaggcttgtttctcttgattgcacttcaagt
gatgaagatctaacccccgtttttattgaggaccagttgacttgggggttggtcattaat
tttgaaagggttaagagtgtttctgatgatgatgcaagtgtgaaacctgaggacgcatct
tacaatgttgatgttcttacaagatgtgttgtaaagaaagataaaattggaaaaaaatct
attaagattgttcctcttaaagaagctggagaacctcttgtggtttcagttcctatctct
caggtcaatacaataagtagtctgcgtttatttataccgaaggatcttttgccattggaa
gcacgagaaaatacactgaagaaagtgttggaaactctttctagatttggtgagaaagga
ctgccccttctagatcctgaagaagacatgaagattcaaagcagctcatataaaaaagca
tctcgtaggatagaagctttggagagcctatttgaaaaacatgaaattgcgaaatcacca
cttataaaacagaaattgaaagttttacagaggaagcaagaacttactgcaaagataaag
tccattaagaaaacattaagatcttctactactttagctttcaaggatgaacttaaagca
agaaagagagttcttcggaggctcggatatgctacaagtgacaatgtggtcgagttaaaa
gggaaggttgcttgtgaaattagtagcgcagatgaattgaccctaacagaactaatgttc
aatggtgtattgaaggacatcaaggtggaagagatggtttctctcctctcttgttttgtc
tggcaggaaaaaattcatgatggtgccaaacctcgggaagaacttgatctgctttttatg
caattacaagacacggctcggagagttgcccaacttcagctcgagtgcaaggtggaaatt
gacgtcgagagctttgtgaagtcatttaggcctgacattatggaggctgtgtatgcttgg
gcgaaaggttcaaagttctatgagatcatggaaatcacacaagtctttgaaggtagcttg
attagagcgattagacgacttgaggaagttcttcagcaattaatagcagcagctaagtca
attggggaaactcaacttgaggcaaagtttgaagaagctgtgttcatgataaagagggac
atcgtctttgcagcatccctgtatttgtag
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