Vigna umbellata (ricebean): 124845969
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Entry
124845969 CDS
T09662
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124845969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124845969
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124845969
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124845969
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
124845969
NCBI-ProteinID:
XP_047179115
LinkDB
All DBs
Position
Unknown
AA seq
890 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKSRPPRLTHLETSITRHKA
HIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFNDVDELYSSLPLDKVET
LEDLVTIPTGLSKVAPSLGVKNSSAVSTSQSASASASQTSEQADDTASQDSNSDNVAKTP
PPKSGGIGSTASTPTGNHTSPISVNVSSHTLSSPPAVAAIPSSNSVRNVLESSNVTNSSS
VNQSTSTKEEDINSFPSRRPSPSLSDATLLRGRNSLSNQATASIPLGSANMVPSNGALGS
VPSASEIAKRNMLAADDRLGSSAMVQPLVSPLSNRLILPQAAKANDGTVSVDSGAVNDAA
AAVSGRVFSPSVVPGMQWRPGSPFQNQSDAGQVRGRTEIAPDQREKFLQKYQQVQQGHST
LLNMPSLVGGNHKQFSAQQQNPLLQQFNSHGSSVSSQSGIGLGVQSTSLSGISSASLQQP
PNSVHSPSSQQSLMLGVSKDLDGGNSKSEEQQQHQNFPDEPTTESTASTVIGKNLINEDD
SKSAYAADSPVGVSASLQESAHTSRDIDLSPGQPLQSNQPTGNLGVIGRRNGAEHGAIGD
SFSASSVSSGGVRDQLYNLQMLEAAHFKIPLPKDSERPRSYTPKHPTITPPSYPQVQSPI
VNNPAFWERVGLEPFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEE
PKVATDEYEQGTYVYFDFHIANDDMQHGWCQRIKTEFTFEYNYLEDDLLV
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagtcgaaagctccagggagagatagatcgtgttctcaagaaggttcaggaa
ggtgttgaagtctttgatagcatctggaacaaggtttacgacacggacaatgctaaccag
aaggagaaatttgaagcagacctcaagaaggagattaagaagctacagaggtatagagac
caaatcaagacgtggattcagtccagtgagatcaaggacaagaaggttagtgcctcatat
gagcaagctttggtggatgcacgcaagctaattgaacgagaaatggaaagatttaagata
tgtgagaaggaaacaaagaccaaagcattttctaaagaaggcttaggtcagcagcctaag
actgatccgaaagagaaagctaaatcagagacaagggactggttaaacaatgtggttggg
gagttagaatcacagattgataactttgaagcagagcttgaagggctttctgttaagaag
ggaaagagcaggccacccagattgacacacctagagacatcaattactcggcacaaggct
catataaaaaaatgtgaattcattttgaggctactagataatgatgaattaagtcctgag
caggttaatgatgttaaagatttcttggatgactatgttgagcgtaatcaggaggatttt
gatgagtttaatgatgttgatgaactgtacagttcattacctttagacaaggtggagacc
ctagaagatcttgttacaattcccactggtctttctaaggtggcacctagtcttggcgtg
aaaaattcttcagcagtatcaacatcacaatcagcatcagcatctgcatcacaaacatct
gagcaagctgacgacacagcatcccaggatagcaattctgacaatgttgccaaaactcca
cctcctaaaagtggtggaattggttctactgcttcaactcctactggcaaccacacttct
ccgatttctgtgaatgtttctagtcataccctgtctagtccacctgctgttgcagccata
cctagttcaaattctgtgcggaatgtcttggagagtagtaatgttaccaattcatcttct
gtaaatcagtctacctctacaaaggaagaagacattaatagcttccctagccggagacca
tctccatcactttctgacgcaacacttttgaggggaagaaactctctatcaaatcaagca
acagccagcatccctcttggttctgcaaacatggtccctagcaatggggcccttggatca
gtcccttcagcctctgaaatagctaaaaggaatatgttggcagctgatgatagacttgga
agtagtgcgatggtgcagcctcttgtatccccgctaagtaatagattgatcttgcctcag
gctgcaaaggctaatgatggaactgtttcagttgactctggtgctgttaacgatgctgct
gcagctgtatctgggagagttttttccccttctgtggttcctggcatgcaatggagacca
ggaagtccctttcagaatcagagtgatgcaggccaggttcgtggaagaactgaaatagct
cctgatcaaagggaaaagtttttgcagaagtatcagcaagtgcaacaagggcacagtacc
cttcttaatatgccttctcttgttgggggaaaccataagcagttttctgcccagcagcaa
aacccccttttgcaacagtttaactctcatggctcatctgtttcttctcaatctggtatt
ggacttggggtccagtccactagtctcagtggtatttcttctgcatcactacagcagcca
cccaattctgtccattccccctctagtcaacagtcactgatgctaggtgtttctaaagat
ttagacggtggcaattctaagagtgaagaacagcagcaacatcagaactttcctgatgag
ccaacaactgaatctactgctagcactgtgattggcaagaatctcataaatgaagatgat
tcaaagtcagcatatgctgcagattctcctgtaggagtgtctgcctctcttcaagaatct
gctcacacttccagagatattgatttgtctccgggccaaccattacaatccaatcaacct
actggcaaccttggtgtcattggtagaagaaatggtgctgaacatggagcaattggtgat
agttttagtgcatccagtgttagttctggtggagtgcgtgatcagttgtataatttgcaa
atgcttgaggcagcccacttcaaaattcccctacccaaagactctgaacggcccaggagt
tatacacctaagcatccgacaattacacctccaagttatcctcaagtacagtcacctatt
gttaataatcctgccttttgggagagagtgggtctggaaccatttggcactgatactcta
ttctttgcattttattaccaacagaatacataccaacaatatttggctgcaaaggagtta
aagaagcagtcttggagataccacagaaagtataacacttggtttcagcggcatgaagag
cccaaagttgctactgatgaatatgaacagggaacttatgtgtactttgatttccatatt
gcaaatgatgacatgcaacatggatggtgtcaaagaattaagactgaattcacttttgag
tataattatcttgaagatgatctccttgtataa
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