Vigna umbellata (ricebean): 124846936
Help
Entry
124846936 CDS
T09662
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124846936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124846936
03041 Spliceosome [BR:
vum03041
]
124846936
03009 Ribosome biogenesis [BR:
vum03009
]
124846936
03016 Transfer RNA biogenesis [BR:
vum03016
]
124846936
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124846936
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124846936
Spliceosome [BR:
vum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124846936
Complex C
U4/U6.U5 tri-SnRNP related factors
124846936
Ribosome biogenesis [BR:
vum03009
]
Eukaryotic type
Pre-60S particles
Helicases
124846936
Transfer RNA biogenesis [BR:
vum03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124846936
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
nSTAND3
Motif
Other DBs
NCBI-GeneID:
124846936
NCBI-ProteinID:
XP_047180265
LinkDB
All DBs
Position
Unknown
AA seq
981 aa
AA seq
DB search
MENEKKESPSLGKRREPELPVTVPETASKPKRARSAERTCVHEVAVPSGYVSSKDSELSG
TLSNPLHKGPMAKSYPFTLDPFQQVSIACLERNESVLVSAHTSAGKTAVAEYAIAMSFRD
RQRVIYTSPLKALSNQKYRELSQEFTDVGLMTGDVTLSPNATCLVMTTEILRGMLYRGSE
VLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIHK
QPCHVVYTDFRPTPLQHYAFPIGGSGLYLVVDENEQFREDNFLKLHDTFGKQNSAEGRRG
GKGGGRGGRGGNTSGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTPE
EKETVEQVFRNAVLCLNEEDRCLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGL
VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGIC
IIMIDEQMEMNNLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQFQ
YEKALPDIEKRVSKLEQEVNLLDASGEAEVSEYHKLKLEIAQLEKKMMTKIIRPEIILYF
LVPGRLVKIREGGTDWGWGVVVNVVKKPSGGGYIVDTLLHCSPCSTENNSRPKPCPPRPG
EKGEMHVVPVQLPLISTLGKLRVSIPSDLRPLEARQSVLLAVQELVNRFPGGLPKLNPVK
DMDVRDSEIVELVNQIEEIEKKMFAHPMHKRQDVDQIKCFERKAEVNHEIQQLRTKMRDS
QLQKFREELKNRSRVLKKLGHIDGDGVVQLKGRAACLVDTGDELLVTELMFNGTFNDLDH
HQVAALASCFIPGDKSNEQIQLRTELARPLQQLQDSARRIAEIQHECKLDINVDEYVEST
VRPYLMDVIYSWSKGVNFADIIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEADLEK
KFAAASESLRRGIMFANSLYL
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgagaagaaggaatcaccgtcgttgggaaagcgaagagaacccgaactacca
gttacagtcccagaaacggcatcgaagccgaaacgagctcgcagcgctgagcgcacgtgc
gtgcacgaggtcgccgttccgagcggttatgtctcaagcaaggactccgagctcagcgga
actctctcgaatcctctccacaagggtcccatggcgaagtcgtatcccttcacactcgac
cccttccaacaggtctccatcgcgtgtttggagcgcaacgagtccgttctcgtctccgcc
cacacctctgctggcaaaaccgccgtcgccgaatacgccattgccatgtctttccgggac
cggcagcgtgtcatctacacgtctccgctcaaggccctcagcaaccagaagtatcgggag
ctcagccaggagttcaccgacgtcggcctcatgactggcgacgtcacgctctcgccgaac
gccacgtgtctcgtcatgaccacagagattctccgcgggatgctctaccgaggttccgaa
gtcctgaaagaagtggcgtgggttatattcgatgaaattcactacatgaaggatcgagaa
cgaggcgttgtatgggaagagagtataatttttctgcctccggcgattaagatggtgttt
ctctccgcaactatgtctaatgcgacggaatttgctgagtggatttgtaatatccacaag
cagccttgtcacgttgtgtacactgattttaggcctacgccgctgcaacactatgcgttt
cccatcggagggagtgggctgtatttggttgtagatgagaatgaacagttcagggaggac
aattttctgaagctgcatgatactttcgggaagcagaattcggctgaagggaggagaggt
gggaaaggcggtggaagaggtgggagaggtggcaatacttctggtggttctgacatttac
aagattgttaagatgataatggaacggaaattccaacctgttatcatctttagcttcagt
agaagagagtgtgaacaacatgcaatgtctatgtccaagcttgacttcaacaccccagaa
gaaaaggaaacagtggagcaagtttttcgaaatgcagtgctatgtttgaatgaggaagac
aggtgcttacctgctattgagctgatgttgcctcttcttcagcgagggattgctgtccat
cattctggacttcttcctgttatcaaagaattggttgagcttcttttccaggaaggtctt
gtaaaagccctatttgctactgaaacttttgccatgggtttgaatatgccagcaaaaaca
gtagtattcactgctgttaagaagtgggatggtgatagtcaccgatatattggatctggt
gaatatatacagatgagtggaagggctgggcgtcgaggcaaagatgagcggggaatctgt
atcataatgattgatgaacagatggaaatgaataacctcaaagacatggttttgggtaaa
cctgctcctttagttagtactttcaggcttagctattactcaattttaaatttgatgagc
cgtgctgagggtcagttcactgctgaacacgtaatacgaaattcatttcaccaatttcag
tatgaaaaggccttaccagatatagagaaaagggtgtcaaagctggagcaggaggtaaac
ttgcttgatgcttcaggggaggctgaagtgtctgagtatcataagctaaaattggaaata
gcacagctggagaagaagatgatgacaaaaataattaggccagaaataatcctttatttt
cttgtccctggtcgattggtcaaaatcagagaaggtggaactgattggggctggggtgtt
gtagtcaatgttgttaaaaaaccttctggtggtggttatatagttgatactttacttcat
tgttcaccttgttcaactgaaaacaattcacggccaaaaccatgtccacctcgtcccgga
gagaaaggtgaaatgcatgtggtccctgttcaattaccattaatatccactcttggtaaa
ctgagggtatctataccttctgatcttcgacccttggaagcaaggcagagtgtactgctt
gctgtacaggagcttgtcaatcgttttccgggaggtcttccaaagcttaaccctgtaaag
gacatggacgtacgtgactcagagatagttgaactagttaatcaaatagaggaaattgag
aagaaaatgtttgctcatcctatgcataagcgccaagatgtggatcaaattaaatgcttt
gagaggaaagcagaagtgaatcatgaaattcagcaactgaggacaaaaatgcgggattct
cagctacaaaaatttcgtgaagaattaaagaatcgctcccgagtcttaaagaagcttggt
catattgatggtgatggtgtagtacagttgaagggacgggcagcctgcttggttgacacg
ggggatgaactccttgttactgaattgatgtttaatggtacttttaatgaccttgaccac
catcaagttgctgctcttgcaagttgtttcatcccaggagataaatcaaatgagcagata
caactaagaacagagcttgcaaggcccttgcaacaacttcaagatagtgcaagaaggata
gcagaaattcaacatgaatgcaaattggatataaatgtggatgagtatgttgaatcaaca
gtaaggccatacttgatggatgtaatatactcgtggtcaaagggagtaaattttgccgat
attatacaaatgactgacatctttgagggaagtatcattcggagtgctagaaggcttgat
gagtttttgaaccagttgcgtgctgctgcaaatgcagttggagaggctgacttggagaag
aaatttgcagctgcaagtgaaagccttcgaagaggcattatgtttgcaaattctctgtat
ttatga
DBGET
integrated database retrieval system
