Vigna umbellata (ricebean): 124847378
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Entry
124847378 CDS
T09662
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124847378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124847378
03012 Translation factors [BR:
vum03012
]
124847378
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124847378
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124847378
Translation factors [BR:
vum03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124847378
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
OB_NTP_bind
R3H
HA2_C
HA2_N
nSTAND3
Ank_2
AAA_19
ATPase
AAA_23
AAA_22
AAA_14
ABC_tran
AAA_7
NPHP3_N
Rad17
T2SSE
AAA_16
AAA_25
Motif
Other DBs
NCBI-GeneID:
124847378
NCBI-ProteinID:
XP_047180818
LinkDB
All DBs
Position
Unknown
AA seq
1153 aa
AA seq
DB search
MTNNREKKGEALHRQSPKVDEVTRIRISQILEQFRASKDEVYKFDAGLSNQERALVHQMS
QKMGFRSKSSGLGKDRRVSVQKIKKKSDTDNGFANIPRFTFSEEAKWVLGDLFAHYPPGD
GDLWEMVGENSDSTADKTKQKQDDIFSRPSMSKTEIARRLEALSSRINKVSNLKQIIEDR
SKLPIASFKDVITSTVESHQVVLISGETGCGKTTQVPQFILDHMWGKGEVCKIVCTQPRR
ISATSVSERISTERVETIGENVGYKIRLESRGGRQSSIVLCTTGVLLRVLVSKGYHSSKI
GHMKDDVSGITHIIMDEIHERDRYSDFMLAIIRDMLPSYPQLRLILMSATIDAARFSQYF
GGCPIISVPGFTYPVKTFYLEDVLSIVKSKKDNHLDSTTCSTSINTRELSEEEKLSMDEA
INLAWSNDEWDMLLELVSSEGTPELFNYQHSLTGITPLIVFAGKGRVGDMCMLLSCGADC
HLKAQDGMTALEIAERQNQPEAAEILKKHLHNDFSNSTEENKLLDKYLSTVNPELVDVVL
IEQLIRKICIDSTDGGILVFLPGWDEINRTREKLFASSFFKNSSRFMLISLHSMVPSVEQ
KKVFRHPPHGCRKIVLSTNIAETAITIDDIVYVIDTGRMKEKSYDPYNNVSTLQSSWISK
ASAKQREGRAGRCQPGICYHLFSRTRAASLPDFQIPEIRRIPIEELCLQVKLLDPNCKVE
EFLGKTLDPPVFESIRNAIIILQEIGAFSSDEKLTKLGEKLGSLPVHPSICRMLFFAILM
NCLEPALTLACASEYRDPFTLPMLPEEKKRATAAKSELASLYGGCGDQFAVLAAFECWNN
SKKMGLEARFCSQYFVSSGAMHMLSGMRRQLQAELIRNGFIHEDASSYSVNAYDPGVLHA
VLVAGLYPMVGRFIPNKIGKRFIVETAGGDKVRLHNHSTNFKLSFMKNLDHTLIVYDEIT
RSDVGMNIRNCTVVGQLPLLLLSTEIAVAPTDENDDDEDDAEGSEDEVGSEDGMELDDKS
SGGREDKLMSSPDNRVKVIMDRWLYFRSTAIDVAQLYCLRERLSAAILYKVTYPRNDLPP
IMAASMDAIACILSCDGCIGMPSISEGVDSLTTMVNATTLGRSGSRRFGKRPKGSLAELI
NYDGRQNSGPSKA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacaacagagagaagaaaggagaggcacttcaccgccaaagccccaaagttgat
gaagtcaccaggattcgcatttcccagattctggaacagttccgagcttccaaagatgaa
gtgtacaagtttgatgctggtttgtccaaccaagagcgtgctttggtgcatcaaatgtcc
cagaaaatggggtttagatctaaaagttctgggcttgggaaggaccggagagtgtccgtt
caaaaaattaaaaaaaagtctgacacagataatgggtttgcaaatattcctcgtttcaca
ttttctgaagaggcgaagtgggtgctgggtgatttatttgctcattatcctcctggtgat
ggagacttgtgggagatggttggagaaaatagtgacagtactgctgataaaacaaaacag
aagcaggatgatattttcagcaggccctcgatgagcaaaactgaaattgctaggagattg
gaagctctttcttctagaattaacaaagtctctaacttgaaacagatcattgaagataga
tctaagcttccaattgcatctttcaaggatgtaataacatcaactgttgaatctcaccag
gtagttctcatatctggtgaaactggttgtggaaagactacgcaggttccacaatttatt
ttggatcatatgtggggtaagggagaggtatgtaaaatagtttgtactcagcctcggcgg
atctctgcaacttcagtttctgagagaatctccactgagagagtagagactattggagaa
aatgtgggatataagatacggttagaaagcagagggggaaggcaatcatcaattgtgcta
tgtaccactggagtgctactaagggtgttggtttccaaaggttaccattcgtctaagata
gggcacatgaaggatgacgtttctggaatcactcacataattatggatgaaattcatgaa
agggatcgatactctgacttcatgttggcaatcatcagagacatgctcccttcatatcct
caactacgtctgatattaatgagtgccaccattgatgctgcgagattttctcaatacttt
gggggctgcccaatcatcagtgttccgggattcacttatccggtcaaaactttctatttg
gaggatgtactttctattgtaaaatctaagaaagataatcatcttgatagtaccacatgt
agtacttcaataaacaccagggagctaagtgaagaagagaagctttctatggatgaagct
attaatttggcttggtctaatgatgaatgggacatgctgttagagttggtttcttctgaa
ggaaccccagaactctttaattaccaacattctttaactggcattactccactaattgtg
tttgctgggaagggtagagtgggtgatatgtgcatgctcttatcttgtggagcagattgc
catttaaaggcccaggatggaatgactgcactggagatcgctgaaaggcaaaaccaacca
gaagcagctgaaatattgaagaagcacttacacaatgatttttccaactccacagaagag
aataagctacttgataaatacctgtcaacggtcaacccagaacttgttgatgttgttttg
atagaacagttgataagaaaaatatgcattgattcaacagatggagggatccttgttttt
cttccaggctgggatgaaataaatagaacacgtgagaaattgtttgcatcatcttttttc
aagaattcctcaaggtttatgctcatatctctacattcaatggttccaagcgtggaacaa
aaaaaggtttttaggcacccacctcatgggtgccgcaaaattgtactatcaacaaatatt
gctgaaacagctatcaccattgatgatatagtgtatgtcatagacactggacgaatgaag
gaaaaaagttatgatccttataacaatgtgtcaactcttcagtcatcttggatttcaaaa
gcaagtgctaagcagcgagagggacgtgctggccgctgtcaacccggaatatgctatcat
ctattctcaaggactcgagcagcttccttaccagattttcagattccagaaattagaaga
atacctattgaggagctttgtctgcaggtgaagttgctagatccaaattgcaaagtagaa
gaatttctgggcaagacgctagatcctccagtttttgagtccatacgcaatgctattata
attcttcaagagattggggcattttcaagtgatgaaaaactcaccaaactaggggagaag
cttggttctcttcctgttcacccatcaatctgcaggatgcttttttttgctatattgatg
aactgccttgagccagctttaactcttgcttgtgcatccgagtatagagatccgtttaca
cttccaatgttacctgaagagaaaaagagagccacagctgccaaatctgagcttgcttct
ttatatgggggttgcggtgatcagtttgctgtattggctgcattcgaatgctggaataac
tcaaagaaaatgggtctagaagcacggttttgttctcagtattttgtgtcatcaggtgcc
atgcacatgttatctggcatgcgcaggcaacttcaagcggaactaattcgaaatgggttt
atccatgaagatgcttcaagttacagtgtgaatgcatatgaccctggtgtactccatgct
gttttggtagcaggactatatccaatggtcgggagatttattccaaataaaattgggaaa
agatttatagttgaaacagcaggtggtgataaagttcggttgcacaatcattctacaaat
ttcaagttgtcattcatgaaaaatttagatcacactttaattgtgtatgatgagattact
cgtagtgacgtgggtatgaacataaggaactgcacagttgttggacaacttccacttttg
ctgctttcgacagagattgctgttgctccaaccgatgaaaatgacgacgacgaggatgat
gcagaagggagtgaagatgaagttggaagtgaagatgggatggaacttgatgataaatct
agtggaggccgtgaggataagttgatgtcttctcctgataacagggttaaagtaatcatg
gaccgttggctttattttcgttcaacagcaatcgatgttgctcagctatactgcttgaga
gagagactatcagcagcaattttatacaaagtgacatatccaaggaatgatcttcctcca
atcatggcggcttctatggatgctatagcttgtattttgtcttgtgatgggtgcattggt
atgccatcaatttcagaaggtgtggactcattaaccactatggtaaatgcaacaacttta
ggcaggtcaggatctaggcgatttggtaagagaccaaaaggatcacttgcagagcttatt
aattatgatggtcgccaaaactctgggccttctaaagcctag
DBGET
integrated database retrieval system
