Vigna umbellata (ricebean): 124847579
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Entry
124847579 CDS
T09662
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
vum
Vigna umbellata (ricebean)
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124847579
03036 Chromosome and associated proteins [BR:
vum03036
]
124847579
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
124847579
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124847579
Chromosome and associated proteins [BR:
vum03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
124847579
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_22
Mov-10_helical
Helicase_RecD
AAA_16
UvrD_C
ATPase_2
DEAD
AAA
AroM
AAA_7
SLFN-g3_helicase
AAA_5
Motif
Other DBs
NCBI-GeneID:
124847579
NCBI-ProteinID:
XP_047181060
LinkDB
All DBs
Position
Unknown
AA seq
886 aa
AA seq
DB search
MSTAGWSDEERSVIGDTAEIGFLDFEEEKSVCSYFDYEGPVVVSAPFPFVEGKPQSVLMG
DTAVDLISIRNTTDEPVDLWSVHIFASNPTDSFTLSLTEPLPENSNAEGEQSCLESFSLE
DRVLQPRENLKVWLSCKTKEIGMCSSVIYFDAGDEKIERVVFLLVEDKISKSLASKRPYS
RAKKKDKFVVDNYVPGSRPAGKPTRRYINRLPKYHIPRDMRELLENNQIPQVVEQGLTRS
TYSSYFKTLIIMEEIQLEEDMRIYDMESISMRKRNNRFLSMEVPGLAERRPSLVHGDYIF
VKLAYDNSNRQPYQGFIHRVEADEIYLKFDPEFHFYHKDENTYDVHFTYNRINMRRLYQA
AEATQNLGTDILFPSASIKRHIKTTALVPISGTFNEEQICSIKMILGCKGAPPYLIHGPP
GTGKTRTIVEVILQLYKYHKNARILVCAPSNSAADYILERLLTQQDIELRENEIFRLNAS
TRPYEDVKPEIIRFCFFDDMVFKCPPVNALSYYKIIISTYMSASLLYAEDLARGHFSHIF
LDEAGQASEPETLIPVSHLCTMKTVVVLAGDQLQLGPVIYSKKADEFGLGVSYMERLSQL
PLYASGDTNYVTRLIRNYRCHPAILHLPSKLFYCGELLACRDSTTFLTMGELLPNKEFPI
LFYGIQGCDEREGNNPSWFNRIEVSKVIELVSRLIAGGNIKEKNIGIITPYRQQVSKIKQ
TLENLDMPDIKVGSVEQFQGQEMEVIIISTVRSTIKHNEFDRVHCLGFLSNYRRFNVAIT
RAISLLVIIGNPHIICKDDYWSQMLWYCVDNSSYQGCSLPERVEPYDDEDAEENPYSTED
NAWPSNNEEWGQDSSNNAEWGQDSSQIGLPKPVNDEAEWSDGWRSN
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgccgggtggtcagatgaggaacgctctgtcattggagatacggctgaaatt
gggtttctagattttgaggaagagaaatctgtttgcagttactttgattatgaaggtcca
gttgttgtatctgccccatttccatttgtggaaggcaagcctcaatctgtacttatgggg
gacactgctgtggatttaataagcattaggaatactactgatgaaccagtggacctgtgg
agtgttcatatttttgcctcaaatcctacggacagtttcactctctctcttacagagcct
ctaccggaaaattcaaatgcagaaggagaacagagctgcttagaatctttctctttggag
gacagggtgcttcaacctcgtgaaaacttgaaagtatggctgtcttgcaagacaaaagaa
attggcatgtgttcatcagtcatatattttgatgctggagatgaaaaaattgaaagggtg
gttttcctcttagttgaagacaaaatctccaagtcgttggcttctaagaggccctattca
agagcaaagaaaaaggacaaatttgttgtggataattatgttccaggttcacgtcctgca
gggaagccaactcgaagatacataaataggcttccgaaatatcacattcccagggacatg
agagagttgcttgagaataatcagatccctcaagttgttgaacaaggtcttactagaagt
acttattcatcttatttcaaaacattaataataatggaagagatccagttggaggaagac
atgaggatttatgatatggaatctatatcgatgagaaagaggaacaatcgatttttgtct
atggaggttcctgggcttgctgagagaagaccatctctggttcatggggattatatattt
gttaagctcgcatatgataatagcaacagacagccttatcagggctttatccaccgagtt
gaagctgatgaaatttatttgaagtttgatcctgaatttcacttttaccacaaggacgaa
aatacatatgatgttcacttcacctataacaggatcaatatgagaaggctatatcaagca
gctgaggcaacacaaaacttgggtaccgacatcctctttccatctgcatcaataaagaga
cacattaaaactactgctctagtacccatatctggtacttttaacgaggagcaaatttgt
tcaatcaaaatgattcttggttgcaaaggtgcaccaccttatttgattcatggaccccct
ggtacgggaaagacaaggacaatagtagaagtaatcctgcagctctacaaatatcacaag
aatgctcggattcttgtgtgtgcaccctcaaatagtgcagcagactacatactggagaga
ctccttactcaacaggacattgagttgcgagaaaatgaaatattcaggctcaatgcatct
actaggccatacgaagatgttaaacctgaaattatccgcttctgcttctttgatgatatg
gtatttaagtgtcccccagtgaacgccctcagttattataagatcataatatccacatat
atgagtgcgtctcttctttatgctgaagatcttgcccgtggtcacttttcccatattttt
ttggacgaggctggccaagcttctgaacctgaaaccttgatccctgtatcccacctctgc
acaatgaaaactgttgttgttctggctggagaccaattgcaattgggtccagtaatatat
tccaagaaagcagatgagtttggtttgggggtttcatatatggaacgattgtctcaactc
ccgctatatgccagtggagatactaattatgtaacacgattgattcggaactatcgatgc
cacccagcaatattgcatcttccttcaaagttgttctattgtggggaattgcttgcttgt
agagattccacaactttcctgacgatgggagagttgctacctaacaaggaatttcctatt
cttttctatggcatccaaggatgcgatgaaagagaaggaaataacccatcgtggtttaac
cgcattgaagtcagtaaggttatagaacttgtcagtagactgattgcaggagggaacata
aaggagaaaaacattggcataataactccatataggcaacaagtgtcaaaaataaaacag
acacttgaaaatctagatatgcctgacatcaaagtgggtagtgtcgagcaattccaagga
caagagatggaggttattatcatatcaacagttcgatcaactatcaaacataacgagttt
gacagagtccactgtcttggctttttgagcaattatagaaggtttaacgtggctataact
cgtgctatatcattgctggttataattgggaatccgcatataatctgcaaggatgactat
tggagccaaatgttgtggtactgtgtggacaattcatcttaccagggttgttctcttcct
gagagggtggaaccttatgacgatgaagacgctgaagagaacccatactcgactgaagat
aatgcgtggccctcaaataacgaagaatggggtcaagattcatcaaacaatgcagaatgg
ggtcaagattcttcccagatagggctccctaaacctgttaatgatgaagctgagtggtct
gatggctggagaagtaattaa
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