Vigna umbellata (ricebean): 124847657
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Entry
124847657 CDS
T09662
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124847657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124847657
03012 Translation factors [BR:
vum03012
]
124847657
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124847657
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124847657
Translation factors [BR:
vum03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124847657
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RVT_3
HA2_C
Helicase_C
HA2_N
Ank_2
OB_NTP_bind
Ank_5
ANK_LRRK2
Motif
Other DBs
NCBI-GeneID:
124847657
NCBI-ProteinID:
XP_047181157
LinkDB
All DBs
Position
Unknown
AA seq
1112 aa
AA seq
DB search
FLHHVSKFALWQECELAWWLSLRNQPRTVVLPDELVDPVIVQILDNYPVTYVPQEILPSN
PHLRLILMSGSFDATRFSQYFGACPIIYVPGLTYPVKNYYLEDVLSIVKSGADNHGLSQV
EKLSLDEAIHLAWSNDAWCSLLELVYSKARPKVFDYQHSLTGLNPLMVFAGKGKVGDMCM
LLSLGANCHLKAKDGTTALEIAEKEHQPVAVELLKKHMNNDFSVKEEKNLLDKYLTTANL
KDVDVVLIEQLLRKICVDSKDGSIIVFLPGWDEIVRTRERLLSSSFFNKRSKFKVVSLHS
MVLASEMNEAFMPAPHGCRKIVLSTNIAETAVPLDDLVYVIDTGLIKEKSYDPCKNLFTL
QSSWISKASAKKREGCASRCHPGACYHLYSKVQADSLLDFQVPEIKRMPIEELCLQVKLF
DPTCKIEEFLSQTLDPPGFESIRSAARVLQEIGALSVDEHLTELGQKFGYLPVHPYTSRM
LIFSILMNCLDPALTLACASKCKDLFVLPILPDEKKRAAAARSELASLYGGCGDQFSIIA
AYQCWVNSKKMGLESRFCSQYFVSQSAMSKLDVMRKNLAVELYRNGLINRSSRNYCSNAY
DPGILQAVLVAGMYPMVGKLFFPYGSGKKILVNTKSIDSVCLNSHTLNYKLSSQKILDCS
FVVYDEITSVDRGLCIGDSTIVGLFPLFLLSKEIDVDHAKDCTDNIITVIIDGWLYFEST
AFYAFHMNYLRELLTAAIIYKVTYSTDVLSPVLQAAVDSLACILSCHGRSCISLISDCAM
KQTTTNATNTKKFQTQLINQDAHQTSPSQVKASEPEAIENSINQTSKNARIGLACSNPTK
KTFLTLEGFCTGLINHNDVPSRASKSTGAEKPRDPTRRNTETGSARSIQTAHLNDDVTMT
DVRASRQPYQPKKYYYWHGACYEKIWVGWSFPEVGWIKANVDGSYKLEEHLTSCGGVFRD
HTGSWCFGFTLNLGTFCFGSSDPTSNDFSVQSELWGVLTALKLAKEKKISQLWIESDSVD
AVDCVLNKRAEKHDLYTPLVQSILELIEGNWKVRISHSYREGNQVADWLSKYGHSKEIGL
RVYDAPPKGVKKLLIRDYSGFSKQRYVRLTAR
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
tttttacatcatgtgtcaaaatttgcgctttggcaagagtgtgaactggcctggtggctt
tccttgagaaatcagcctcgtactgtggttttaccggatgagttagttgaccctgtgata
gtacagattctggataattatcctgttacctatgttccacaagaaatcctgccttcaaat
ccccacctacgtctgatactgatgagtggtagttttgatgctacaagattttctcaatat
tttggtgcctgcccaattatctatgttccagggctcacgtatccggtaaaaaattactac
ttggaggatgtactttctattgtaaaatcaggtgcagataaccatggacttagtcaagta
gaaaagctgtctctagatgaagcaatacatttggcttggtctaatgatgcctggtgctca
ctattagagcttgtttatagtaaagctaggccaaaggtctttgattatcagcattcatta
actggcctcaatccattaatggtgtttgctggaaaaggtaaagtgggtgatatgtgcatg
ctcttatcattaggggctaactgccatttaaaggccaaagatggaacaactgctttagag
atagctgagaaagaacaccagccagtagctgttgaattgctgaagaagcacatgaataat
gatttttctgtcaaagaagagaaaaatttactagataaatatcttacaacagccaacctt
aaagatgttgatgttgttctgatagaacaacttttaagaaaaatatgtgttgattcaaaa
gatggaagcatcattgttttccttccaggttgggatgagatagttagaacacgtgaaaga
ttgctttcatcctcatttttcaataaaagatcaaagtttaaggtggtatctcttcattca
atggttctagcctctgagatgaatgaggcttttatgcccgcaccccatggttgtcgcaaa
attgttctgtctaccaatattgctgaaactgctgtccctctggatgatttagtgtatgtt
atcgacactgggcttatcaaagaaaaaagttatgatccttgcaaaaatttatttactctc
caatcatcttggatttcaaaagctagtgctaagaaaagagagggatgtgccagtcgctgt
catcctggagcttgttatcatctatattcaaaagttcaagcagattctttgttagatttt
caggttcctgaaattaagagaatgcctattgaggagctgtgtttgcaggttaagttgttt
gatccaacctgtaaaatagaagaatttttgagtcagacattagatcctcctggttttgag
tctattcgaagtgctgctagagttcttcaggagattggggcattgtcagttgatgaacac
ctgacagagctagggcagaagtttggctatcttcctgttcatccatatacgagcaggatg
cttattttttccatattaatgaattgccttgatccagctttaacacttgcatgtgcatct
aagtgtaaagatctatttgtgcttcctattttacctgatgaaaagaagagagctgcagct
gctagatctgagcttgcttcgttgtatgggggttgtggtgatcagttttctataatagca
gcatatcaatgctgggttaattcaaagaaaatgggtctagaatcacggttttgttctcag
tactttgtttctcaaagtgcaatgagcaagttagatgtcatgcggaagaatttagctgtg
gaactatataggaatgggcttattaataggagtagtagaaattattgctctaatgcctat
gatcctggtatacttcaagctgttttggtagcagggatgtacccgatggttgggaaattg
ttctttccttacggaagtggaaagaagattcttgttaacactaaaagtatcgatagtgtt
tgcttgaatagtcatactttgaattataagttgtcttcacagaaaattcttgattgctct
tttgttgtatatgatgagattactagcgtcgaccggggcttgtgcataggggacagtacc
attgttggactatttccattatttttgctttccaaagagattgatgttgatcatgcaaag
gattgtactgataatataatcacagtaatcatagatggatggctttattttgagtcaaca
gcattctatgcttttcacatgaactacttgagagagctattaacagcagcaattatatac
aaagtgacatattcaacggatgttctttctcctgttctacaagccgcagtggattcccta
gcttgcattctttcttgtcatgggcgttcttgcatatcactcatctcagattgtgctatg
aaacagactacaacaaatgctactaatacaaaaaaattccaaacacagcttataaatcaa
gatgcacaccagaccagtccatctcaagttaaggcatctgaacctgaggccattgaaaat
tcaattaaccagacaagtaaaaatgctcgaataggtttggcttgttcgaatccaacaaag
aaaaccttcttgactcttgaaggattctgtacagggcttataaatcacaatgatgtgcct
tctagagctagcaaatccacaggtgcagaaaagcctagggatcccacaagaaggaacact
gaaacaggttcagctcgttcaatccagacagcacatttaaatgatgacgtaaccatgact
gatgtgagagcttctagacaaccatatcaaccaaaaaagtattattactggcatggggct
tgctatgaaaagatctgggttgggtggtcctttcctgaggtgggatggattaaagctaat
gtagatgggtcttataagcttgaagaacatcttactagctgtggtggagttttccgtgat
cacacaggttcttggtgttttggcttcacgttaaatcttggaacattctgtttcggatca
tcagatccaacgtctaatgactttagtgtgcaatctgaactgtggggtgtcctgactgcc
ctgaagcttgctaaggagaaaaagatttcgcagctgtggattgagtctgatagtgttgat
gcagtggactgtgttctgaataaacgggcggaaaaacatgatctttatactcctcttgtt
caatcgatacttgagttgattgagggaaattggaaggttcgaatctctcatagttatcgt
gaaggaaaccaagtggctgactggttgtcaaaatatgggcatagtaaggagataggtctc
cgagtgtacgatgcccctcccaaaggggtaaaaaaactattaattcgggactattctgga
ttctctaaacaacgatatgtacgtctcactgcaagatga
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