Vigna umbellata (ricebean): 124847658
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Entry
124847658 CDS
T09662
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124847658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124847658
03012 Translation factors [BR:
vum03012
]
124847658
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124847658
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124847658
Translation factors [BR:
vum03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124847658
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RVT_3
HA2_C
HA2_N
OB_NTP_bind
DUF5775
Motif
Other DBs
NCBI-GeneID:
124847658
NCBI-ProteinID:
XP_047181158
LinkDB
All DBs
Position
Unknown
AA seq
698 aa
AA seq
DB search
SQVKLFDPTCKIEEFLSQTLDPPGFESIRSAARVLQEIGALSVDEHLTELGQKFGYLPVH
PYTSRMLIFSILMNCLDPALTLACASKCKDLFVLPILPDEKKRAAAARSELASLYGGCGD
QFSIIAAYQCWVNSKKMGLESRFCSQYFVSQSAMSKLDVMRKNLAGELYRNGLINRSSRN
YCSNAYDPGILQAVLVAGMYPMVGKLFFPYGSGKKILVNTKSIDSVCLNSHTLNYKLSSQ
KILDCSFVVYDEITSVDRGLCIGDSTIVGLFPLFLLSKEIDVDHAKDCTDNIITVIIDGW
LYFESTAFDAFHMNYLRELLTAAIIYKVTYSTDVLSPVLQAAVDSLACILSCHGRSCISL
ISDCAMKQTTTNATNTKKFQTQLINQDAHQTSPSQVKASEPEAIENSINQTSKNARIGLA
CSNPTKKTFLTLEGFCTGLINHNDVPSRASKSTGAEKPRDPTRRNTETGSARSIQTAHLN
DDVTMTDVRASRQPYQPKKYYYWHGACYEKIWVGWSFPEVGWIKANVDGSYKLEEHLTSC
GGVFRDHTGSWCFGFTLNLGTFCFGSSDPTSNDFSVQSELWGVLTALKLAKEKKISQLWI
ESDSVDAVDCVLNKRAEKHDLYTPLVQSILELIEGNWKVRISHSYREGNQVADWLSKYGH
SKEIGLRVYDAPPKGVKKLLIRDYSGFSKQRYVRLTAR
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
tcacaggttaagttgtttgatccaacctgtaaaatagaagaatttttgagtcagacatta
gatcctcctggttttgagtctattcgaagtgctgctagagttcttcaggagattggggca
ttgtcagttgatgaacacctgacagagctagggcagaagtttggctatcttcctgttcat
ccatatacgagcaggatgcttattttctccatattaatgaattgccttgatccagcttta
acacttgcatgtgcatctaagtgtaaagatctatttgtgcttcctattttacctgatgaa
aagaagagagctgcagctgctagatctgagcttgcttcgttgtatgggggttgtggtgat
cagttttctataatagcagcatatcaatgctgggttaattcaaagaaaatgggtctagaa
tcacggttttgttctcagtactttgtttctcaaagtgcaatgagcaagttagatgtcatg
cggaagaatttagctggggaactatataggaatgggcttattaataggagtagtagaaat
tattgctctaatgcctatgatcctggtatacttcaagctgttttggtagcagggatgtac
ccgatggttgggaaattgttctttccttacggaagtggaaagaagattcttgttaacact
aaaagtatcgatagtgtttgcttgaatagtcatactttgaattataagttgtcttcacag
aaaattcttgattgctcttttgttgtatatgatgagattactagcgtcgaccggggcttg
tgcataggggacagtaccattgttggactatttccattatttttgctttccaaagagatt
gatgttgatcatgcaaaggattgtactgataatataatcacagtaatcatagatggatgg
ctttattttgagtcaacagcattcgatgcttttcacatgaactacttgagagagctatta
acagcagcaattatatacaaagtgacatattcaacggatgttctttctcctgttctacaa
gccgcagtggattccctagcttgcattctttcttgtcatgggcgttcttgcatatcactc
atctcagattgtgctatgaaacagactacaacaaatgctactaatacaaaaaaattccaa
acacagcttataaatcaagatgcacaccagaccagtccatctcaagttaaggcatctgaa
cctgaggccattgaaaattcaattaaccagacaagtaaaaatgctcgaataggtttggct
tgttcgaatccaacaaagaaaaccttcttgactcttgaaggattctgtacagggcttata
aatcacaatgatgtgccttctagagctagcaaatccacaggtgcagaaaagcctagggat
cccacaagaaggaacactgaaacaggttcagctcgttcaatccagacagcacatttaaat
gatgacgtaaccatgactgatgtgagagcttctagacaaccatatcaaccaaaaaagtat
tattactggcatggggcttgctatgaaaagatctgggttgggtggtcctttcctgaggtg
ggatggattaaagctaatgtagatgggtcttataagcttgaagaacatcttactagctgt
ggtggagttttccgtgatcacacaggttcttggtgttttggcttcacgttaaatcttgga
acattctgtttcggatcatcagatccaacgtctaatgactttagtgtgcaatctgaactg
tggggtgtcctgactgccctgaagcttgctaaggagaaaaagatttcgcagctgtggatt
gagtctgatagtgttgatgcagtggactgtgttctgaataaacgggcggaaaaacatgat
ctttatactcctcttgttcaatcgatacttgagttgattgagggaaattggaaggttcga
atctctcatagttatcgtgaaggaaaccaagtggctgactggttgtcaaaatatgggcat
agtaaggagataggtctccgagtgtacgatgcccctcccaaaggggtaaaaaaactatta
attcgggactattctggattctctaaacaacgatatgtacgtctcactgcaagatga
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