Vigna umbellata (ricebean): 124848687
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Entry
124848687 CDS
T09662
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03420
Nucleotide excision repair
vum04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124848687
09124 Replication and repair
03420 Nucleotide excision repair
124848687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
vum04121
]
124848687
03400 DNA repair and recombination proteins [BR:
vum03400
]
124848687
Ubiquitin system [BR:
vum04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
124848687
DNA repair and recombination proteins [BR:
vum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
124848687
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML_2
Beta-prop_RIG_2nd
EIF3I
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EML
ANAPC4_WD40
WDR90_beta-prop_4th
WD_LRWD1
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_Nup120_160
Beta-prop_IFT140_1st
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
124848687
NCBI-ProteinID:
XP_047182403
LinkDB
All DBs
Position
Unknown
AA seq
443 aa
AA seq
DB search
MHSHVWKQIRDREGGKVRANHFVNSIKSYRISQLQLANHKDIVSPHKGAVNSLQIDSTEG
RYLLSAASDASVAVYDVQRPSTSEASSAFCKHRCLFVVDKHHQQAHKYAVSTAIWYPIDT
GLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRIAMSNLSTSHMLIAAGTEDVQVRLCD
IASGAFAHTLSGHRDGVMTVEWSNSSEWVLITGGCDGAIRFWDIRRAGCFQVLDQSQTQL
GRRPPILKRSMITKDSSAKLRGAQKKHANGSGYKQQPIGRVPSKGPMKQRLHPGMLSTQD
RATAHYGAVTGLKATEDGMYLLSAGSDSRLRLWDVQSGCNTLVNFETVRLQINKPLQLAT
TQDSALVFVPCMRSVKAFDMWSGYTYTVLRGHYECVNSCWFNQQNQELYTGGNDRQILVW
SPARSMDDEMGEGPAEDQDNWSS
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgcattcgcatgtgtggaagcagatcagagacagagaaggtgggaaagtgcgcgccaac
catttcgtcaatagcataaaatcctatcgcatttcgcaactccaattggcgaatcacaaa
gacatcgtgtcccctcacaagggcgccgtcaactcccttcagattgattcgacagaggga
aggtatctgctctcagccgcctccgatgcctctgtagccgtctacgacgttcaacgaccc
tccacttccgaagcttcctccgccttctgcaaacacaggtgcttatttgtcgttgacaag
caccaccaacaggcccacaaatatgccgtctccacagccatatggtatcccattgacacc
ggtttgttcgtcactggctcatacgatcatcacattaatgtttgggataccaataccacc
caggtggtggtgaacttcaaaatgccaggaaaggtgcataggattgcaatgtctaatttg
tcaacgtctcacatgcttatcgctgctggcactgaggatgttcaagttcgcctttgtgat
attgcttccggggctttcgctcatactttgtccggtcaccgagatggtgtaatgactgtt
gaatggtctaattcaagtgaatgggtattaattaccgggggatgtgatggtgcaatacga
ttttgggacatcaggcgtgctggctgtttccaagttttagatcaatctcagactcagctt
ggaagacgcccacctatactcaaacggtccatgataacaaaggattcgagtgcaaaattg
cgtggtgcccaaaagaaacatgctaatggaagtggttacaaacaacaaccaattggcaga
gttccatccaagggaccaatgaagcagaggttacatccaggaatgctgtctactcaggat
cgggcgactgctcattatggtgctgtgacagggttaaaggcaacagaggatggcatgtat
ctactaagtgcaggatctgattcaagattaaggttgtgggatgttcaatctggctgcaac
acacttgtaaactttgaaacagttcgtctgcaaataaataaacctcttcaattagccacc
actcaagattcagcccttgtttttgttccatgcatgagatctgtgaaagcatttgacatg
tggtctgggtacacctacacagtattacgtggccactatgaatgtgtgaactcttgctgg
tttaatcaacaaaatcaggaactttacactggtggaaatgatagacaaattcttgtctgg
tcacctgcaagatcaatggatgatgaaatgggtgaaggtcctgctgaggatcaggataac
tggagtagttga
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integrated database retrieval system
