KEGG   Vigna unguiculata (cowpea): 114162174
Entry
114162174         CDS       T06017                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
vun  Vigna unguiculata (cowpea)
Pathway
vun03030  DNA replication
vun03410  Base excision repair
vun03420  Nucleotide excision repair
vun03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vun00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    114162174
   03410 Base excision repair
    114162174
   03420 Nucleotide excision repair
    114162174
   03430 Mismatch repair
    114162174
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vun03032]
    114162174
   03036 Chromosome and associated proteins [BR:vun03036]
    114162174
   03400 DNA repair and recombination proteins [BR:vun03400]
    114162174
DNA replication proteins [BR:vun03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    114162174
  DNA Replication Termination Factors
   ELG1-RFC complex
    114162174
Chromosome and associated proteins [BR:vun03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    114162174
DNA repair and recombination proteins [BR:vun03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     114162174
  Check point factors
   HRAD17(Rad24)-RFC complex
    114162174
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_lid_RFC1 AAA_22 Rad17 AAA_16 RuvB_N Mg_chelatase ResIII DEAD AAA_11 SLFN-g3_helicase AAA_14 AAA_5 AAA_24 ADK AAA_assoc_2 nSTAND3 nSTAND_NTPase5 AAA_2 AAA_18 AAA_28 AAA_30 ATPase_2 Effector_1 AAA_7 AAA_19 PhoH RNA_helicase TIP49 AAA_25 AAA_17 NPHP3_N NB-ARC Cdc6_lid
Other DBs
NCBI-GeneID: 114162174
NCBI-ProteinID: XP_027901770
LinkDB
Position
9:33026178..33031956
AA seq 338 aa
MQSSQQWVEKYRPRQVKDVAYQEEVIRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAR
QLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTSKRKNGYLCPPFKIIVLDEA
DSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEVIMSSRIL
YICKEEGLYLDTAALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPEKV
VEAVLQACRSGNFDFANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLG
EADKCLVDGADEYLQLLAVVSNTMKAFSNIPEEFAYEC
NT seq 1017 nt   +upstreamnt  +downstreamnt
atgcagagctctcagcaatgggtcgagaaataccgaccgaggcaagtgaaagatgttgcg
taccaagaggaagttattcgagttctaacaaatacacttgaaactggaagttgcccccac
atgctcttctatggtcctcccggcactggaaaaacaactactgcccttgcaattgcccgt
cagcttttcgggcctgagctctacaagtctagggtgctggagctgaatgcaagtgatgat
agagggattaatgttgttcgtacaaaaataaaagattttgctgctgtggctgttggtact
tctaagcgtaagaatggttatctttgtcctccatttaagattattgttctagatgaggct
gattcaatgacagaagatgctcagaatgccctgaggcgtacaatggaaacgtactctaaa
gttacaaggttcttttttatatgcaactatgtgagcaggattatagaaccgcttgcttca
aggtgtgcaaaattcaggttcaagccattgtcagaagtaatcatgagcagccggatattg
tacatatgcaaagaagagggactctatcttgatactgcggctctttcaacccttagttct
atttctcatggagatcttcgccgggcaatcacatacttgcagtctgcagctcgcttattt
ggatcttcaatttcttcagagaatctgatttctgtgtctggggttgttccagaaaaagtt
gtggaggcagttcttcaagcttgcagaagtggtaattttgatttcgcaaacaaggaagtc
aacaatttcattgcagagggatatccagcttctcaaatgcttactcagttatttgaagcc
attgttgaagaaaatgatctatcagatgaacagaaagcaagaatatccaagaagctgggt
gaagctgataagtgtctagttgacggtgctgatgaatacttgcaacttcttgctgtggtc
agcaatacaatgaaggcttttagcaacatcccagaagaatttgcttacgagtgttag

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