Vigna unguiculata (cowpea): 114162444
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Entry
114162444 CDS
T06017
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03013
Nucleocytoplasmic transport
vun03015
mRNA surveillance pathway
vun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114162444
09122 Translation
03013 Nucleocytoplasmic transport
114162444
03015 mRNA surveillance pathway
114162444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114162444
03041 Spliceosome [BR:
vun03041
]
114162444
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114162444
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
114162444
Spliceosome [BR:
vun03041
]
Complex C
Other components
EJC/TREX
114162444
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
114162444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
114162444
NCBI-ProteinID:
XP_027902141
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All DBs
Position
9:complement(38288082..38294027)
Genome browser
AA seq
427 aa
AA seq
DB search
MGETKDDAYEEELIDYEEEEDKAPDSIGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILAL
TRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaccaaggatgacgcatacgaggaagagcttattgactacgaggaggaagaa
gacaaggctcccgactccatcggagctaaagtcaacggcgaagctaccaagaagggctat
gttggaattcacagttcaggattcagagactttcttctgaagccagagctacttcgggct
attgtggactcgggatttgagcatccttccgaagtgcaacatgagtgcatccctcaagca
attctgggaatggatgtgatttgtcaagcgaaatctggaatgggaaagactgctgtcttt
gttctctcgactctgcagcagattgatcccgttcctggccaagtttctgctcttgttctg
tgccataccagagaattagcataccagatatgccatgagtttgagaggttcagtacctat
ttacccgatctcaaggtcgctgtcttttatggtggggttaacatcaaagttcacaaggat
ctgctaaaaaatgagtgccctcatattgttgtcggaacacctggaagaatactagcattg
actagggataaggatctttctttgaagaatgtgagacatttcatattagatgaatgcgac
aagatgttggaatcattggatatgaggaaagatgttcaagacattttcaagatgactccc
catgataagcaagttatgatgttttccgcaacactcagcaaggaaattcgcccagtctgc
aagaaatttatgcaagatcctatggaaatttatgtggatgatgaggcgaagttgacactt
cacggacttgtgcagcactacatcaaattgaaagaagaggagaaaaaccggaagttgaat
gatcttctcgatgcactggactttaatcaagttgttatctttgttaaaagtgttagtaga
gcagccgagctggacaaactacttgtggagtgcaactttccttctatatgcatccactct
ggcatgtcccaggaagaaaggttaaagcgttataaaggtttcaaagaggggcatacaaga
attcttgttgcaacagatttggttggaagagggattgacattgaacgtgtcaacattgtt
ataaactatgacatgcctgattctgcagacacatacttgcacagggttggtcgagctgga
agatttggcaccaaaggccttgcaattacatttgtttcttgttctaccgatgttgatgtt
ctcaacaatgttcaatcaaggtttgaggtggatataaaacagctgccagagcagattgat
acctcaacttatatgccgtcgtag
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