Vigna unguiculata (cowpea): 114162570
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Entry
114162570 CDS
T06017
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03013
Nucleocytoplasmic transport
vun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114162570
03015 mRNA surveillance pathway
114162570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114162570
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114162570
mRNA cycle factors
P-body specific factors
114162570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
114162570
NCBI-ProteinID:
XP_027902301
LinkDB
All DBs
Position
9:4728021..4743661
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AA seq
1189 aa
AA seq
DB search
MDHHEDESNSKQDDEEAVARLEEIKKSVEAKMALRQSNLNPERPDSGFLRTLDSSIKRNT
AVIKKLKQINEEQRESLMDELRSVNLSKFVSEAVTAICDAKLRSSDIQAAVQICSLLHQR
YKDFAPSLIQGLLKIFSPGKPGDESDADRNLKAMKKRSTLKLLMELFFVGVIEDGGIFIN
IIKDLTNGEQLKDRDAAQTSLTLLSSFARQGRIFLGLSVSGPEIHEEFFKGLNITADQKK
VFRKACYSFYDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDHLY
RNVSSLAEALDMQPPVMPEDGHTTRVTSGEEGMSSASGKDSSAVEPIWDDEDTRTFYECL
PDLRAFVPAVLLGETEPKSSEQSAKGQDQPTEIVPESDKGQQTTHESGEISTESNALPEA
ESTERVKDKEEKDKSKESDREKEKEKDNDKKGENEKDKLRSLEGTNLDALLQRLPGCVSR
DLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLAYYSRMVATLSTCMKDVSSILLQ
MLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIASPGLVFSCLKACLDDFTHHNIDV
ACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSA
RVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWNECETYLLKCFMKVYKGKYGQI
HLIASLAAGLSRYHDEFAVAIVDEVLEEIRVGLELNDYGMQQRRIAYMRFLGELYNYEHV
DSSVIFETLYLILVYGHGTSEQDVLDPPEDCFRIRLIITLLETCGHYFDRGSSKRKLDRF
LIHFQRYILSKGALPLDIEFDLQDLFADLRPNMVRYTSIEEVNTALVELEEHDRIVSADK
ASGEKHSDNEKPSSRTISTITVVGNGQSIDNGTEENGVQDDVNDSETDSGSDTIDVEGHD
DEELDEENHDDGCETEDDDDDDDDGPGPASDEEDEVHVRQKVTEVDPLEEADFDQELKAV
VQESMEQRRQELRGRPTLNMMIPMNVFEGSTKDHHGRGVSGESGDEALDEDTGGNKEVQV
RVLVKRGNKQQTKQMFIPRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEELNGLG
TQPANWMQSVGNKTGGRGSTLEGNSGRGSGSRHRHHNYSGSGTYYSRRK
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccacgaggatgagagcaacagcaaacaagacgatgaggaagctgttgctcgc
cttgaggaaataaagaagtccgttgaggcaaaaatggctttacgtcaaagcaatttgaat
cctgaaaggcctgattcaggattcttaaggacattggattccagtattaagcgcaacact
gcggttattaagaagctgaagcagatcaatgaggagcagcgtgaatctttgatggatgag
ttaagaagtgtcaacttaagcaaatttgtcagtgaagccgtgactgcaatatgtgatgcc
aaacttagaagttctgatatacaagctgcagttcagatttgttctttgcttcatcaaagg
tacaaggactttgcaccaagcctgattcaagggcttctcaaaatcttctctcctggaaag
cctggcgatgaatcagatgctgatagaaacttgaaggcaatgaagaagcgcagcaccctg
aaacttcttatggaacttttctttgtcggagttattgaagatggtggcatttttataaat
atcataaaagatcttaccaatggggaacagctgaaagatcgggatgctgcacaaacaagt
ttgacccttctttctagttttgctcgtcaggggagaatttttcttggactctctgttagt
gggccggaaattcatgaagagttttttaaaggccttaacatcacagctgatcagaagaaa
gttttccggaaagcatgctattccttttatgatgctgctgctgaactacttcagtctgag
cattcttcacttcgattaatggagcatgaaaattcaaagattttgaatgcaaaaggagaa
ctcagtgatgaaaatattgcttcatatgaaaagcttcgtaaatcctatgatcatttatac
agaaatgtttcatcattagcagaagcacttgatatgcagcctcctgttatgccagaggat
ggacacacgactagggttaccagtggtgaggagggtatgtcttctgcttcgggtaaagat
tcttctgctgttgaaccaatatgggatgatgaagatacaaggactttctatgaatgttta
cctgatcttagagcgtttgttcctgctgtgcttttgggagaaacagagccaaaaagcagt
gagcaatctgcaaagggtcaagaccaaccaactgaaatagtacctgaatcagacaaaggt
caacagaccacccatgaaagtggagagatctctacagagtctaatgctttgccagaggca
gaaagcacagaaagagtgaaggataaggaagaaaaagacaagtctaaagaatcggacaga
gagaaggaaaaagaaaaagataatgataaaaagggggaaaatgaaaaggacaaactcaga
agtcttgaagggacaaatttggatgctctactgcagaggcttcctggctgtgtgagccgg
gaccttatagatcaattaactgttgagttctgttatctgaattcaaaatcaaatcgaaaa
aagcttgtgagggctttgttcaatgttccaaggacatctctagaactgctagcatattat
tcacgcatggttgccacactctcaacttgtatgaaggatgtctcctccattctgttacaa
atgctggaggaggaattcaatttcttaataaataaaaaggatcagatgaacattgagaca
aagataaggaacatcaggttcattggagaactttgcaagttcaaaattgcttctcctggc
ctagtctttagttgtttgaaggcctgtttagatgattttacacatcacaacattgatgta
gcttgcaatcttcttgaaacatgtggccgttttctgtatcggtctccagaaactagtata
cgaatggctaacatgttggagatactgatgcgcttgaaaaatgtaaaaaatttggatccg
agacatagcactttagtggagaatgcatactacctttgcaaaccaccagaaagatctgca
cgagtagctaaagttcgtcctccattgcatcagtatatcagaaaattacttttctctgat
cttgacaagtctaccattgagcatgtgctaaggcaactgcgcaaattaccatggaatgaa
tgtgaaacctatcttttgaagtgcttcatgaaggtctacaaaggaaagtatggtcagatc
cacctcattgcatctcttgctgctggattaagtcgctatcatgatgagtttgctgtagct
attgttgatgaggttcttgaggagattagagttgggctggagttaaatgactatggtatg
cagcaaagacgcattgcttacatgcgattcttaggggagctttacaactatgagcatgtg
gactcttctgttatttttgagacgctatatctcattctcgtctatggtcatgggacatca
gagcaagatgtacttgatccacctgaagattgttttcgcataaggttgatcattactcta
cttgaaacttgtgggcattactttgatcgtggctcttctaagaggaaacttgatcggttc
ctaatacacttccagaggtatattttaagcaaaggggcactacctctggacattgaattt
gacttacaggatctgtttgccgacttacgacccaatatggttcgttacacttctattgag
gaagtgaatacagctctagtagaactggaggaacatgatcggatagtttctgctgataag
gctagtggtgaaaaacattctgacaatgaaaagccttcgagtaggaccatttccactatt
actgtggttggcaatggacagagcattgataatggcacggaggaaaatggagtgcaagat
gatgttaatgacagtgagactgattcagggagtgacacaattgatgtagagggtcatgat
gatgaagagttggatgaggagaatcatgatgatggctgtgaaactgaggatgatgacgat
gacgatgacgatggacctggacctgcctccgatgaagaggatgaagtgcacgtgagacaa
aaggtgacggaggtggatcctctagaagaagctgattttgatcaggagctcaaggctgta
gtgcaggagagtatggaacagagaaggcaggaactaaggggtcgtcctacattgaacatg
atgattccaatgaatgtctttgagggatctacaaaggatcaccacgggaggggagttagt
ggggaaagtggtgatgaggcactagatgaggatactggtggaaacaaagaggttcaggtg
agagttctagtgaagcgaggaaacaagcagcaaacaaaacagatgttcatcccacggaat
tcctcactagtgcagagtacaaaacagaaagaagcagccgagcttcaagagaaagaagac
atcaagagacttgttttggagtataatgacagagaagaggaggagcttaatggattagga
acccagccagcaaactggatgcagagtgtaggtaacaagactggtggccgtggtagcact
ttggaaggaaacagtggcaggggtagtggatcaagacatcgacatcataactattctggc
agtggaacatattatagcagaagaaagtga
DBGET
integrated database retrieval system
