Vigna unguiculata (cowpea): 114163116
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Entry
114163116 CDS
T06017
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
114163116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vun03021
]
114163116
03019 Messenger RNA biogenesis [BR:
vun03019
]
114163116
Transcription machinery [BR:
vun03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
114163116
RNA polymerase I system
114163116
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
114163116
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW6_SPT51-2
KOW2_Spt5
Spt5-NGN
KOW4_SPT5
KOW
KOW7_SPT5
KOW5_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
DUF4438
ProQ_C
Motif
Other DBs
NCBI-GeneID:
114163116
NCBI-ProteinID:
XP_027903005
LinkDB
All DBs
Position
9:32140012..32146738
Genome browser
AA seq
1030 aa
AA seq
DB search
MSHRGMDDDDDDYMEDEQVADFEEEDDRRGRGGGGRKRRRSGFIDDDAEEVDEDDEEEDD
DDEDFDARGGRRRQYKKVSASNFFDEEAVVDSDEEEEEEEGEDDFIVEGGADLPEEDDGR
RMRNRRMLPHHQEDHEDLEAVARSIQERYGRRLTDYDEETTDVEQQALLPSVRDPKLWMV
KCAIGRERETAVCLMQKYIDRGSELQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNI
FGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKL
IPRIDLQALANKLEGKEVVKKKAFVPPPRFMNVDEARELHIRVEHRRDTYGERFDAIGGM
MFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGESGDGDVASLSTLFANRKKGHFMKG
DAIIVVKGDLKNLKGKVEKVDEDNVHIKPEIEGLPKTIAVNEKELCKYFEPGNHVKVVSG
AQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTGVTRIGDYELRDLVLLD
NMSFGVIIRVESEAFQVLKGIPDRHEVVLVKLREIKCKIDKKISVQDRYKNTVSSKDVVR
IVDGSSKGKQGPVEHIYRGILFIFDRHHLEHAGFICAKAQSCVVVGGSRSSGDRNGDAYS
RFPTLRNPSRIPPSPRRFPRGGPMDSGGRHRGGRGHDGLAGTTVKVRQGPYKGYRGRVID
VKGTSVRVELESQMKVVTVDRNHISDNVAITPYRDTSRYGMGSETPMHPSRTPLHPYMTP
MRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYE
APTPGAGWASTPGGNYSEAGTPRDSSAYANAPSPYLPSTPGGQPMTPSSASYLPGTPGGQ
PMTPGTGGMDMMSPVLGGDNEGPWFIPDILVNVHRAGDESVGVIREVLPDGSYKVALGSS
GNGETITALPNEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILD
LVILAKLAQP
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaccggggcatggatgacgacgatgatgattacatggaggacgagcaggtcgca
gacttcgaagaggaggatgaccgccgagggcgcggtggcggcggaaggaagcgcagaaga
tctggtttcattgatgatgacgctgaggaggtagatgaggatgatgaggaggaagatgac
gatgatgaggatttcgatgcccgaggtggtcgtaggcgtcaatacaagaaggtttcagct
tctaatttttttgatgaggaagccgtggtggatagcgatgaggaagaggaagaggaagaa
ggcgaagacgacttcattgtggagggtggagctgatctaccagaagaagatgatgggaga
aggatgcgaaataggcgtatgctgccgcatcaccaagaagatcatgaagatcttgaagct
gtggccagaagcatccaggaacgttatggaaggcgcctaactgattatgatgaagaaacg
acagatgtagaacaacaagctcttttgccatctgtgagagatccaaagctttggatggtc
aaatgcgcaattggtcgcgaaagagaaacagccgtttgcctcatgcaaaagtacatagat
aggggatctgaattgcaaataagatcagctattgctcttgatcatctcaaaaactatata
tatgtggaagcagataaagaagcccatgtgagagaggcttgcaaaggtctacgcaatata
tttggccaaaaaattactctggtcccaatcagagaaatgacagatgttctgtcagtcgaa
agcaaagcaattgatctggccagagatacttgggttagaatgaagattgggacatataaa
ggggacttggccaaagtagtggatgttgataatgtgcggcagagagttactgttaaatta
attccaaggatagacctacaggctcttgcaaataaattggaaggtaaggaggttgtgaaa
aagaaggcttttgttcctccccctcgatttatgaatgttgatgaagcaagggaactgcat
atccgtgtggagcatagacgtgacacatatggtgaacgatttgatgcaattgggggcatg
atgttcaaagatggtttcttatacaaaaccgtatcaataaaatccatcagtgctcagaac
atcaaacctacttttgatgagttggaaaaatttcgtaaaccgggtgagagtggagatggt
gatgtggctagtctttcaactttgtttgcgaacaggaagaaaggtcattttatgaaaggt
gatgccatcattgttgttaagggtgacttaaagaaccttaagggaaaggtggagaaggtg
gatgaagacaatgttcatataaaaccagaaatagagggactcccaaaaactattgcggta
aatgagaaggagctgtgtaaatattttgagcctggaaaccacgttaaggttgtttctggc
gcgcaagaaggggctacaggcatggttgtgaaggtggaacaacatgtcttgattttaata
tctgatacaacaaaagaacatattcgtgtctttgcagatgatgttgtagaaagttcagaa
gtaacgactggagttactagaattggagactatgaacttcgtgaccttgtattgcttgat
aatatgagctttggtgtcataatacgtgtagaaagtgaagcatttcaggttctaaagggg
attcctgacagacacgaagttgtgctggttaaattaagagagatcaaatgtaagatagat
aagaaaataagtgtgcaagataggtataagaatacagtttcatcaaaggatgttgtccgg
attgttgatggttcgagtaaagggaaacaaggtcctgtggaacacatatatagaggaata
ttgttcatctttgatcgccatcatcttgaacatgcgggctttatatgtgctaaggcccaa
tcatgtgtggtagtgggaggttcacgctccagcggtgacagaaatggtgatgcctactca
agatttcccactcttagaaatccaagtcgtattccaccatccccaaggaggtttcctcgt
ggagggccaatggattctggagggagacataggggtgggagggggcatgacggtttggca
ggtacaactgttaaagtgcgtcagggtccatataaaggttatcgtgggcgtgttatagat
gttaaaggcacatcagttcgtgttgagcttgaatctcaaatgaaggttgtaacagttgac
cgcaaccatatatctgacaatgtggctataactccatatcgtgatacatctcgctatgga
atgggaagtgaaaccccaatgcatccttctcggactcccttacatccatatatgactcca
atgagagatcctggagcaacacctattcatgatggaatgaggacgcctatgcgtgatcga
gcatggaatccatatactccaatgagtcctccaagggacaactgggaagatggaaatcca
ggctcttggggagcaagtccacagtatcagcctggaagccctccatcacgaccgtatgaa
gccccaactcctggtgctggttgggctagcacacctggtggaaattatagtgaagctgga
acacctcgggacagttctgcctatgctaatgctccaagtccatatttaccatcaacacct
ggtgggcagcctatgacaccaagttcagcatcttatcttccgggcactcctggaggacag
cctatgactccaggcacaggtggtatggacatgatgtctccagttttaggtggggacaat
gaagggccatggtttataccagatatattagtcaatgtacacagggccggagacgaatct
gttggagttataagagaggttcttccggatggctcgtacaaggtagcacttggatctagt
ggtaatggtgaaacgattaccgcccttcctaatgaaatggaggctgtggtaccaagaaaa
tcagacaaaataaagattatgggtggggcattacgtggtgccactggcaagttgattggt
gtagatggtactgatggaattgtaaaggtagatgacacgttggatgtcaagattttagac
ttggttattttggcaaaattagctcaaccatga
DBGET
integrated database retrieval system
