Vigna unguiculata (cowpea): 114163291
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Entry
114163291 CDS
T06017
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A isoform X1
KO
K07466
replication factor A1
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03030
DNA replication
vun03420
Nucleotide excision repair
vun03430
Mismatch repair
vun03440
Homologous recombination
vun03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114163291
03420 Nucleotide excision repair
114163291
03430 Mismatch repair
114163291
03440 Homologous recombination
114163291
03460 Fanconi anemia pathway
114163291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vun03000
]
114163291
03032 DNA replication proteins [BR:
vun03032
]
114163291
03400 DNA repair and recombination proteins [BR:
vun03400
]
114163291
Transcription factors [BR:
vun03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
114163291
DNA replication proteins [BR:
vun03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
114163291
DNA repair and recombination proteins [BR:
vun03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
114163291
MMR (mismatch excision repair)
114163291
DSBR (double strand breaks repair)
HR (homologous recombination)
114163291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
RMI1_C
Motif
Other DBs
NCBI-GeneID:
114163291
NCBI-ProteinID:
XP_027903317
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All DBs
Position
9:complement(3260389..3263424)
Genome browser
AA seq
634 aa
AA seq
DB search
MSVNLTENAIPAIISGDVNAKPLVQVLDVALVSNTNNSQQQRYRLLISDAVLSHHAMLAT
QLNDRVRTGRVRKGSVVQLLDYICTPFKNRKIIMVLNMETIIADFEIIGNPKPSLDSDLP
SVRAIADNTVENLARSNNTSNTISNSAAQNASHDKAQNFRPTIQPPYQPPPVYKGRGAVV
KNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFWFDLLDSDGGEIRV
TCFNAVVDRFYNVIEVGKVYMISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDDS
IPRQQFSFRPISDIENVDNNSILDVIGVVTSVNPSVPILRKNGMETLRRILSLKDSSGRS
VEFTLWGEFCNREGQQLQEMVDSGFFPILAVKAGKVNDFSGKSIGSISTTQLFINPEFPE
ANSLRQWFDLVGKDSASHSISRDVIPGGSKNEVRKTVSQIKDEGLGRSDKPDWITIRATI
SFIKTDTFCYTACPLVIGDRQCNKKVTRSGNTRWQCDRCNQEFEECDYRYLLQAQILDGT
GLTWVTAFQEAGEEIMEYSAKDLYMLKHEQQDDERFGEIIKSRLFKQFMFRLKIKEELYG
DEQKVKITVVKVDKVNYSSESQYMLDSISKFCRK
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgaatctcactgaaaacgcgattccggcgataattagtggcgacgttaacgcc
aaaccgcttgttcaggttctggacgtggcgttagtctccaacaccaacaactcgcagcag
cagagataccgtcttctgatttccgacgccgttttgtctcaccacgcgatgctcgccact
cagctcaacgaccgagtccgaaccggtcgggttcggaagggttcggttgttcagcttctc
gattatatatgcactcccttcaagaaccgcaagattattatggttctaaacatggaaact
ataatagctgattttgagatcattgggaatccgaagccatccttggattcagatttacca
agtgtgagagctatagcagataacactgtggagaatttggccaggagtaacaatactagt
aatactattagtaactctgctgctcaaaatgcaagtcatgataaagcccagaatttcagg
ccaacaattcaacctccataccaaccgcctccagtttacaaaggccgtggtgcagttgtg
aaaaatgaggcgccagcacgcatcattcctatagctgctttaaatccttatcaaggtcgg
tgggctatcaaggcaagggtaactgctaaaggggatctgcgccgctataataatgcacgc
ggtgatgggaaagtcttctggtttgatctcctggattctgatggaggtgaaatacgagta
acatgctttaatgctgttgttgatcgcttctataatgtaattgaggttggtaaagtttac
atgatatcgaaaggtagcttaaaacctgcacagaagaatttcaaccacttgaagaatgaa
tgggaaatttttttggaatcaacttcaacagtggagttgtgcccggatgaggatgattct
atacctagacagcagttctcatttcgacctatcagtgacattgagaatgttgacaataac
tccatccttgatgttattggggttgtgacatctgtgaacccttctgttcccatcttgagg
aagaatggaatggaaaccctgagaagaattttgagtctaaaagacagttctggcaggagt
gttgaatttacactgtggggagaattttgcaacagggaagggcaacaattgcaagagatg
gtagattctgggtttttccctattttagcagtcaaagcggggaaggtgaatgattttagt
ggaaagtcgataggctctatttctaccacacagcttttcataaatcctgagttccccgag
gccaatagcttaagacaatggtttgatctagttggaaaagattctgcttcccattcaatt
tctagggacgttattcctggaggatcgaagaatgaggtacgcaaaactgtatctcaaatc
aaggatgaaggtctaggacgatcagacaagccagactggataacaataagggcaactata
tcgttcatcaagactgatacattttgttacacagcttgccctctggtgattggagatcga
caatgcaataagaaagtgactaggtcaggaaacacaagatggcaatgtgatagatgcaat
caggaatttgaggagtgtgattatcgataccttctgcaagctcaaattctggatggcaca
ggattaacttgggtaactgctttccaggaagcaggtgaagagattatggagtattcagcg
aaagatctgtacatgttgaaacatgaacaacaggatgatgagaggtttggagaaataatc
aagagccgactcttcaaacagtttatgtttaggctgaaaatcaaagaggaattatatggc
gatgaacaaaaggtcaagattactgtagttaaggtagataaggtgaactattcttcagag
agtcaatacatgcttgattcgatttccaagttttgtaggaagtga
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