Vigna unguiculata (cowpea): 114163540
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Entry
114163540 CDS
T06017
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114163540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vun03021
]
114163540
03041 Spliceosome [BR:
vun03041
]
114163540
03036 Chromosome and associated proteins [BR:
vun03036
]
114163540
Transcription machinery [BR:
vun03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
114163540
Spliceosome [BR:
vun03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
114163540
Complex B
114163540
Complex C
U2 SnRNP specific factors
114163540
Chromosome and associated proteins [BR:
vun03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
114163540
TFTC complex
114163540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
114163540
NCBI-ProteinID:
XP_027903647
LinkDB
All DBs
Position
1:36466977..36483310
Genome browser
AA seq
1366 aa
AA seq
DB search
MAVSEEECSSAKSGPSSSSSASRYYLSKCVLRGSVVLQVLYAHIRSPSSNDIVFGKETSI
ELVVIEDDGNVQSVCDQPVFGTIKDLAILPWNEKFRARDPQLWGKDLLVATSDSGKLSLL
TFCNEMHRFVSVTHIQMSIPGNPMDLPGRRLAVDSSGCFVASSAYEDRLALFSMSMSSGD
IIDERIVYPSESEGTASSSRSIQRTSICGTIWSICFISQDSRQPSKEQNPVLAVIINRRG
ALQNELLLLEWNVKAHKVLCISQYAEAGPLAYDIAEVPNSGGLAFLFRTGDVLLMDLRDP
RNPSCIYKTNLNILPNAMEEQTYVDDSCKLHDVDDERFNVAACALLELSDYDPMCIDSDN
GGANSSYKYICSWSWGPENNRDPRMIFCVDTGEFFMMEVLFDSEGPKVNLSECLYKGLPC
KALLWVEGGYVAALVEMGDGVVLKLEDGRLCYTNPIQNIAPILDMAVVDYRDEKHDQMFA
CCGVAPEGSLRIIRNGINVENLHRTASIYQGVTGTWTVRMKITDSHHSFLVLSFVEETRI
LSVGLSFTDVTDSVGFEPNVCTLACGLVTDGVLVQIHRYTVKLCLPTKAAHSEGIPLPSP
ISTSWSPDNVSISLGAVGHNFIVVSTSNPCFLFILGVRLLSAYQYEIYEMQHLVLQNELS
CISIPGQEIEQKPSNSSISANNSTISSFQSGVDISKTFVIGTHRPSVEIWFYAPGGGITV
VACGTISLTNTIGTAISGCVPQDVRLVFVDKYYVLVGLRNGMLLRFEWPVEPCPSSPINM
VDTALSSINLVNSASNALGKRNDLPSTLQLIAIRRIGITPVFLVPLGDTLDADIIALSDR
PWLLHSARHSLSYTSISFQPSTHVTPVCSVDCPKGILFVAENCLHLVEMVHSKRLNMQKF
HLEGTPRKVLYHDESKMLLVMRTELNCGTCLSDICCVDPLSGSVVSSFRLELGETGKSME
LIRVGSEQVLVVGTSLSSGPAIMPSGEAESCKGRLLVLCLVHVQNSDSGSMTFCSKGGSS
SQKTSPFHEIVSYAPEQLSSSSLGSSPDDNSSDGIKLDENEVWQFRLAYATKWQGVVFKI
CPYLDRYFLASAGNAFYVCGFPNDNPQRVRRYAMGRTHHMITSLSAHFTRIAVGDCRDGI
ILFSYHEEARKLEQLCCDPSRRLVADCILMDADTAVVSDRKGGIAILCSNHLEDNASTEC
NMTLSCAYFMAEIALSVQKGSYSYRLPADDVLQGGNGPKTNVDSLQNTIIASTLLGSIMI
FIPLSREEYELLEAVQERLVVHQLTAPVLGNDHNEFRSREIRGGVPKILDGDVLTQFLEL
TSMQQKMILSSEPPDXSKTKFEATPTPHVSVNQVVQLLERVHYALN
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttccgaagaggaatgctcttcggcaaagtctggtccctcttcttcttcctcc
gcctcgcgctactacctctccaaatgcgtcctcagaggaagcgtcgttcttcaggttctc
tacgctcacattcgttctccctcctcaaatgatatcgttttcggcaaggagacgtctatt
gaattggtggttattgaggatgatgggaatgtgcaatctgtgtgtgatcagcccgtcttt
ggcaccatcaaagatcttgccatattgccttggaacgagaagtttcgtgcacgtgatcct
cagctgtggggtaaagaccttttggttgctacatccgattctgggaagctgtcgttgctc
acgttttgcaatgaaatgcacaggtttgtttctgtaacacatatacagatgtctattcct
ggaaacccaatggatcttcctggaagaaggttagccgttgattccagtggttgttttgtt
gcttctagtgcatatgaagatcggctggctttgttttctatgtcaatgtccagtggtgat
atcattgatgagagaattgtatatccttcggaaagtgaaggaactgcaagttcttccaga
agcatccaaagaaccagtatctgtggtaccatttggagcatctgcttcatttcacaagat
tccagacaaccaagcaaggagcagaatcctgtacttgctgttattataaataggagggga
gcccttcaaaatgaattgctattattggaatggaatgttaaagcacacaaagtactttgt
atttctcagtatgctgaagctggtcctctggcatatgacattgctgaagttcctaactcc
gggggacttgcattcctgttcaggactggtgatgttctcttgatggatcttagagatccc
cgcaacccatcctgtatttataagactaacttgaacattttgcctaatgccatggaagag
cagacttatgtggatgactcttgtaaattacatgatgttgacgatgaacgctttaatgtt
gctgcctgtgctttgttggaactgagcgattatgatcctatgtgcatagacagtgacaat
ggtggtgctaattcaagctacaagtacatatgctcatggagttggggacctgaaaataat
agagatcctaggatgatcttctgtgtagatactggggagttttttatgatggaagttctt
tttgattctgaaggccctaaagttaatctgtctgagtgtctctataaaggtttgccgtgt
aaagcacttttgtgggttgaaggtggatatgtagctgcccttgtggaaatgggggatggt
gtggtccttaaattggaagatggaaggctatgctatacaaaccctattcaaaacattgca
ccaatcttggatatggcagttgtagattatcgtgatgagaagcatgatcaaatgtttgct
tgctgtggtgtggctccagaggggtcattacggataattcgaaatggtattaatgtggaa
aatctacacaggactgcttctatataccaaggggtaactggtacttggactgtcagaatg
aaaattactgattcacatcattcttttctagttctatcttttgttgaggaaaccagaata
ttgtcagttggcttaagttttactgatgtgactgattcagttggtttcgaacctaatgtc
tgtactctggcatgtggccttgtgactgatggtgtacttgttcagatccaccgatatact
gttaagctttgtttgcccactaaagctgctcattctgaaggtatccctttgccctctcct
atttccacatcttggtctccagacaatgtgagtatcagtctgggggcagttgggcataat
ttcatagttgtgtcaacctctaacccatgctttttgtttatccttggggttagattgcta
tcagcttatcaatatgaaatttatgaaatgcaacatttggtactgcagaatgaattatca
tgcatttccatccctggacaagaaattgagcaaaaaccatcaaattcatccatttcagca
aataatagtaccatctcttctttccaaagtggagtggacatcagtaaaacctttgttatc
ggtacacacaggccctctgtggaaatttggttttatgcaccaggtggaggaattacagta
gttgcttgtgggacaatttcattgacaaatacaatagggactgccatcagtggttgtgta
cctcaagatgtacgacttgtatttgttgataagtattatgttcttgttggattgaggaat
ggaatgctcctccgctttgagtggccggtggaaccatgtccatcatcaccaataaatatg
gtggatactgctttatcttctataaatttggtaaattctgcaagtaatgctttaggcaag
agaaacgaccttccttcaacacttcaattgattgccattcgacgcattggcattactcca
gttttcttggtgccactaggtgacacactggatgctgatataattgctcttagtgatagg
ccttggttattgcatagtgcaagacatagcctttcgtatacttctatctcatttcaacct
tccacacatgtgactcctgtttgctctgttgattgtccaaaaggaatattgtttgttgca
gaaaactgtttacatctggtggagatggttcacagcaagagacttaatatgcagaagttt
catttagagggcactcctaggaaggtcctgtatcacgatgaaagcaaaatgttgctagtg
atgaggactgaactgaattgtggtacatgtttgtctgacatatgttgtgtggatccccta
agtggatcagtagtgtcgtcttttagacttgaacttggagaaacaggaaaatccatggaa
ttaataagagttggaagtgagcaagtgcttgttgttggaactagtctgtcttctggtcca
gcaataatgcccagtggtgaagctgaaagttgcaagggtcgtcttcttgttctttgtctt
gttcatgtgcaaaattctgatagtggttcgatgacgttctgttcaaagggagggtcatca
tctcaaaaaacttcaccattccatgaaattgtttcatatgctcctgaacagttgtcgagc
agcagccttggcagcagtcccgatgataatagttctgatggcatcaaacttgatgaaaat
gaagtatggcagttccgattggcttatgcaacgaaatggcagggggtggtttttaaaatc
tgtccttatcttgatcgttacttcttggcatctgctggcaatgctttctatgtttgtggt
ttccctaatgacaatcctcaaagagtgagaaggtatgctatgggaaggacgcaccacatg
ataacatctttgagtgcacattttacaagaattgcagttggtgattgtcgtgatggaatc
attttattttcttatcatgaggaagctagaaaattggagcaactttgctgtgatccatca
cgaaggttagttgctgattgcattttgatggatgctgatacagctgttgtttcggatcgg
aaaggaggcattgctattttatgttcaaatcatttggaagacaatgcaagtactgaatgc
aacatgacactaagctgtgcttatttcatggctgagattgccttgagcgtccagaagggc
tcatattcatacagacttccagctgatgatgttttgcaaggcggcaatggccccaagaca
aatgttgattcactacaaaatactattattgccagtaccttgttaggaagcataatgatc
ttcatccctttatcaagggaagaatatgagttattagaagctgtccaagaaagacttgtt
gtccatcagttgaccgcacctgttctaggaaatgatcataatgagtttcgcagtcgcgaa
attcggggtggagtgcccaagatacttgatggtgacgtgttaacccagtttctggagctg
acaagtatgcagcaaaagatgattttgtcttccgagccacctgatnatagcaaaaccaag
tttgaagccactcctaccccccatgtttctgtaaatcaggtggttcaacttcttgaacga
gtccattatgctctgaactaa
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integrated database retrieval system
