Vigna unguiculata (cowpea): 114164557
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Entry
114164557 CDS
T06017
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03020
RNA polymerase
vun03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
114164557
09124 Replication and repair
03420 Nucleotide excision repair
114164557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vun03021
]
114164557
03400 DNA repair and recombination proteins [BR:
vun03400
]
114164557
Enzymes [BR:
vun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
114164557
Transcription machinery [BR:
vun03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
114164557
DNA repair and recombination proteins [BR:
vun03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
114164557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
GLYCAM-1
Motif
Other DBs
NCBI-GeneID:
114164557
NCBI-ProteinID:
XP_027905075
LinkDB
All DBs
Position
9:complement(3082172..3089074)
Genome browser
AA seq
1198 aa
AA seq
DB search
MDMEEEQEYEEQMMEDEEIMQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTIQEIVDES
ADIEIRPQSHNPRHKSDVAESIYKISFGQIYLSKPMMTECDGETATLYPMAARLRNLTYS
APLYVDVSKRVIKKGHDGEEVTEIQDLTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC
PYDQGGYFIVNGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRTPSSMF
VRMLSRTSSKGGSSGQYIRATLPYIRTEIPIVIVFRALGFVADKQILEHICYDFSDTQMM
ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVAIGEYCE
TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGKKRLDLAGPLLGGLFRTLFRKLTREVRAY
VQKCVDKGKEVNLQFAINAKTITRGLRYSLSTGNWGQANSAGTTAGVSQVLNRLTYASTL
SHLRRLNSPIGREGKLTKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVNITVGSDAY
PILQFLEEWSTENFEEITPAVIPQATKIFVNGCWIGIHRDPDMLVTTLRMLRRRVDVNTE
VGVVRDIRLKEVHIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEEGGWHDLVSK
GFIEYIDTEEEENTMISMTINDLVQARINSKEAYSNTYTHCEIHPSLILGVCASIIPFPD
HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG
INAIVAICCYSGYNQEDSVIMNQSSIDRGFFRSLLLRSYRDEEKKMGTLVKEGFDRPNRA
DTMGMRHGSYDKLDDDGLVSPGTRVSAEDVIIGKTSLISQEEDVITGKTSPISQEEAQGQ
ALRYTRRDHSISLRRNETGTVDQVLVTTNADGLRSVKLRVRSVRIPQIGDKFSSRHGQKG
TVGMTYRQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT
DVTVDNISKALHKCGYEMLGLETMYSGHTGRRLSAKIFLGPTYYQRLKHMVDDKIHCRGR
GPVQILTRQPTEGRSREGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEQCGL
IAIANLKKNNFECRGCKNKIDIVQVFIPYACKLLCQELMAMAIAPRMLTKGQKKKKGA
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggacatggaagaggaacaggagtacgaggagcaaatgatggaggacgaggagatcatg
caagaagacgcgtgggccgtcatctcggcgtacttcgaagagaaaggtctcgttcgtcaa
cagctcgattccttcgacgagttcatccaaaacaccattcaagaaattgtggatgagtct
gctgacattgaaattcgaccccagtcgcacaatccccgtcacaaatccgacgtcgcagag
agtatttataaaatcagtttcggtcagatttacttgagtaagcctatgatgacagagtgt
gatggagaaactgccacgttgtatcccatggctgccaggttaaggaaccttacgtactca
gctcctttgtatgttgatgtctctaagagggttataaagaaggggcatgatggtgaagag
gtcactgagattcaggatttaaccaaagttttcattggaaaggttcctataatgcttcgg
tctagttactgcacattataccagaattcagagaaggatttgactgagcttggggaatgc
ccgtatgatcaaggtgggtatttcattgttaatgggagtgagaaagttctgattgctcag
gagaagatgagcaccaaccatgtctatgtctttaagaagaggcagccaaacaagtatgct
tatgtggctgaagttcggtccatggcggaatcacagaacagaacacccagttctatgttt
gtgcgcatgctttctcggactagttccaaagggggttcttcaggacaatatatacgtgcc
actcttccttatattcgaactgaaattcccatcgttattgtgtttcgagcattggggttt
gttgctgataaacaaatattagagcatatatgctatgacttttcggacactcaaatgatg
gagttgctacgtccttctctggaagaggcgtttgtaattcaaaatcaacaggttgcactt
gactacattgggaaaagaggagccactgttggtgtaaccaaggaaaagagaattaagtat
gctaaggagatccttcaaaaggagatgctccctcatgttgccattggggaatattgtgag
accaagaaagcttactattttggatatatcattcaccggctactactctgtgcacttggg
cggagagcagaggatgatagggatcattacggaaagaagaggctggatctggctggtcct
ttacttggtggactttttagaacgctgttcagaaagctaacaagagaagtcagggcgtat
gtacagaagtgtgttgataaagggaaagaggttaatctgcaatttgctatcaatgcaaaa
accatcacaaggggccttagatactcactttctactggtaattgggggcaagcaaatagt
gcagggactacagctggagtttcacaggtgctgaaccgcttaacctatgcatccacttta
tcgcacttgcgaagactgaattccccaatagggcgtgaagggaagttgaccaaaccaaga
caactgcataattcacaatggggaatgatgtgtccagcagaaacacccgaaggacaagcc
tgtggactggtgaagaatctggcattgatggtcaacataacggttggttcagatgcatat
cctattctacagtttttggaagaatggagcaccgagaattttgaggaaattactcctgca
gtgattccccaagcaacaaaaatttttgtaaatggttgctggataggtatccatcgtgat
cctgatatgttggtgacaacattaagaatgctgagacgacgggttgatgttaacactgaa
gttggggttgtcagagatatccgtcttaaagaggtgcatatatatacagattatggtcgt
tgcagtcgtcctttattcattgtggataagcaaaggcttctcataaagaagaaggatatt
catgctttacaacagagggaatcccctgaagagggtggatggcatgatctagtgtccaag
ggctttatagaatatattgacacggaagaagaagagaatacaatgatttccatgacaatt
aatgatcttgtacaagctaggatcaattcaaaagaagcatattctaatacgtatactcat
tgtgaaatccacccatcactgattctgggtgtatgtgcttccatcataccatttcctgat
cacaatcagtccccacgtaatacgtatcagtctgcaatgggaaagcaagcaatgggaata
tatgttaccaactaccagtttcggatggacaccttggcctacgttttatattatccgcaa
aagccactggtcactacaagagccatggagcatcttcatttccgtcaactcccagctgga
attaatgccatcgttgccatttgctgttattctggttacaatcaagaagattctgtgatc
atgaaccaatcatcaatagaccgtgggttctttcggtctctgcttctccgttcatataga
gacgaagagaagaagatgggaaccctagtcaaagaaggttttgaccgtccaaatagagct
gacaccatgggaatgagacacggttcttatgataagctggatgatgatggtcttgtatca
ccaggtacaagagtatctgctgaggatgttattattggaaagaccagcctaatatcccaa
gaggaggatgttattactggaaagaccagcccaatatcccaagaggaggcacaaggacaa
gctttacgatacactaggcgtgatcacagcataagcttacgtcgcaatgaaactggaact
gttgatcaagttttggtgacaacaaatgctgatggattgagatctgtgaaattaagagtg
agatctgttcgtataccacagattggtgacaaattcagtagtagacatggtcagaaagga
actgttggcatgacttataggcaagaagacatgccctggaccgtagaaggcatcacccct
gatattattgtgaatccacatgccattccttctcgaatgacaattggtcagcttatcgag
tgtatcatggggaaggtggcagctcatatgggaaaagaaggagatgctactccttttaca
gatgttactgtggacaatatcagcaaagctctgcacaaatgtgggtatgaaatgcttggt
ttagagactatgtacagtggtcatacaggtagacgtctgagtgcaaagattttccttggt
ccgacatattaccaaagactgaagcacatggttgacgacaagatccattgtcgtggtcgg
ggtcctgtgcagatcctcacaaggcaacctactgagggacggtcacgagagggaggtctc
cgatttggagagatggaacgggattgcatgatagctcatggagccgctcacttcctgaag
gaaaggttgtttgatcaaagtgatgcatatagggttcatgtatgtgagcaatgtgggttg
atagctattgcaaatctcaaaaagaataactttgagtgcagggggtgcaaaaacaaaatt
gacattgttcaggttttcattccgtatgcttgtaaactcctctgccaagagttaatggct
atggccatagctccaagaatgcttacaaaaggacaaaagaagaagaagggagcctga
DBGET
integrated database retrieval system
