Vigna unguiculata (cowpea): 114164620
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Entry
114164620 CDS
T06017
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114164620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vun03041
]
114164620
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114164620
Spliceosome [BR:
vun03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
114164620
Complex C
U4/U6.U5 tri-SnRNP related factors
114164620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
AAA_19
PWI
T2SSE
AAA_30
SRP54
nSTAND3
AAA_16
AAA_7
ABC_tran
Motif
Other DBs
NCBI-GeneID:
114164620
NCBI-ProteinID:
XP_027905152
LinkDB
All DBs
Position
9:7408045..7423926
Genome browser
AA seq
1050 aa
AA seq
DB search
MGGDDSLKTWVSDKLMSLLGYSQPTVVQYMIGLTKQATSPADLVGKLVEFGISSMDTHAF
AEEIYSRVPRKSSGLNQYQKQEREAVMLARKQKTYTILKADDDSDDESVDKSSITTTSSR
RSDNSIKKRFRKKTEVQDDQDDEVILRKESERQVKRRTSPDDDSYSESEEERLKDQREKE
ELEQHMRERDAAGTRKLTEHKLSRKEEEEAIRRSSAAEQDGIQALRKVSRQEYLKKREEK
KLEELRDDIEDEQYLFEGVKLSEAEYRELRYKKEIYELVKKRTEEADNVNEYRMPEAYDV
EGGVNQERRFSVAMQRYRDPNAEDKMNPFAEQEAWEEHQIGKATLKYGSKNKKQVSDDYQ
YVFEDQIDFIKASVMDGDKFDYEEMQDSLEKSRAKSALEALQEERKKLPMYRYRDELLQA
VHDHQVLVIVGETGSGKTTQIPQYLHEVGYTKHGMIACTQPRRVAAMSVAARVSQEMGVK
LGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDIL
FGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFRIPGRRYPVEINYTKAPEADYL
DAAIVTSLQIHVTQPPGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLP
TELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVT
PISKASANQRAGRSGRTGPGKCFRLYTAYNFHNDLEENTVPEIQRTNLANVVLTLKSLGI
HDLLNFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASE
NFKCSDDIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWKET
NYSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELISNESDLDAIKKSITSGFFPHS
ARLQKNGSYRTIKHPQTVHIHPSAGLAEVLPRWVIYHELVLTTKEYMRQVTELKPEWLVE
IAPHYYQLKDVEDLHSKKMPRVAGRVQEDK
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgggaggtgatgatagtctaaagacatgggtatcagataaattaatgtccctactggga
tattctcagccaacagtcgtacagtacatgattggactaaccaagcaagctacttcacca
gctgatttggtgggcaagctagtggagttcgggatctcatcaatggatactcatgcattt
gcagaagaaatttactcaagagttcctcgcaaatcatctggtttaaatcaatatcagaaa
caagagagagaagctgtaatgttggccaggaagcagaagacttacacaattttgaaggct
gatgacgatagtgacgatgagtctgtggataaatcttcaataactactacttcatctaga
aggtctgacaattccataaaaaagcgtttcaggaaaaaaactgaagttcaagatgaccaa
gacgatgaggtgattttgagaaaggaaagtgagagacaagtgaagagaagaacttcccct
gatgatgatagttattcggagtctgaagaagaaaggttgaaagatcaaagagagaaggag
gaattagagcagcatatgagagaacgagatgcagctgggacacgaaagttgactgaacat
aaattatcacgaaaggaggaagaagaggcaattcgaagatctagtgctgcagagcaggat
ggtattcaagctttgagaaaggtttcaaggcaagaatacttgaagaaaagggaggaaaag
aaattagaagaactaagagatgatatagaagatgagcaatatctgtttgaaggcgtgaag
ctttcggaagcagaatatcgtgaactgaggtacaagaaagagatatatgaacttgtgaag
aagcgcacagaggaggctgacaatgtgaatgagtatagaatgccagaagcttatgacgtg
gaaggtggtgttaatcaggagaggagattttctgtggctatgcagcgttacagggatcca
aatgctgaagataaaatgaatccatttgctgaacaagaggcttgggaggaacatcagatt
ggaaaggcaacgctgaagtatggttcaaagaacaaaaaacaagtctctgatgattatcag
tatgtgtttgaggaccagattgattttatcaaggcatcagtaatggatggagataagttt
gattatgaagagatgcaagattctcttgaaaagtccagagcaaagtcagctttggaggca
cttcaggaggagagaaaaaagttacccatgtaccgctatcgggatgaattgctccaagct
gttcatgatcaccaggtacttgtaattgttggagaaactggttctggaaagacaacacag
atcccccaatatcttcatgaagttggatacacgaagcatggaatgattgcatgtactcag
ccacggcgtgttgcagctatgagtgttgctgctcgagtttctcaagaaatgggtgttaaa
ttaggacatgaggttggttactccattcgttttgaagattgtacctcagagaaaaccatt
ctgaaatatatgactgatggaatgttactgagggaatttcttggtgagcctgatctagca
agttatagtgttgtgatggtggatgaggctcatgaaagaacactctcaacggatattttg
tttggattagtaaaggatattgctcgtttccgacctgatcttaagttgctgatatcaagt
gctacacttgacgcagagaaattcagtgattactttgattctgcgccaatattcagaatt
ccagggagacgatatcctgttgaaataaactacacgaaagcacctgaggccgactacttg
gatgctgctattgtcacctcgcttcaaatccatgtcactcaacctcccggagatatattg
gtattccttactggacaagaagaaattgaaacagcagaagaaatcttgaagcatagaact
agaggcttggggactaaaattgctgagttaataatatgccctatatatgccaatcttcca
actgaattacaggctaaaatatttgaacccactcctgaaggagcacgaaaggtggtcctt
gcaactaatattgcagaaacgtcattgacaattgatgggatcaagtatgtcattgatccc
ggattctgtaagatgaaaagctataatccaagaacagggatggaatctttactagtaact
cccatatcaaaagcttcagcaaatcagagagcaggtcgttctggaagaacaggtcctgga
aagtgcttccggctgtacactgcatataattttcacaatgatttggaggaaaacactgtt
cctgaaatacagcggactaaccttgcaaatgtagttttgactttaaaaagtcttggtatt
catgacttgttgaactttgattttatggatcctccccctgctgaggccttattaaaagct
ttggagcttctatttgcattaagtgctttaaataagcttggtgagttaaccaaggtcggt
agaaggatggcagagttcccacttgatcctatgttatcaaaaatgatagtggcttcagaa
aatttcaagtgttcagatgatatcatatcaattgctgctatgctttctgttggaaactca
atattttatcgtccaaaggataaacaagtacatgcagacaatgcaaggatgaattttcac
acgggaaatgttggagaccatattgcattgctaaaggtctacaattcgtggaaggagacc
aattattcaacgcaatggtgttatgaaaattatatacaggtaaggagtatgaaacgggca
agggatatccgtgatcaactggcaggtcttttagagagggttgaaattgaactaatatca
aatgagagtgatttagatgccatcaagaaatctattacttctgggttttttccacactct
gctcgactgcaaaagaatggatcttataggactattaaacatccacaaactgttcacata
catcctagtgcggggctggcagaggttcttcctagatgggttatataccatgaactagta
ctcacaaccaaggaatatatgagacaggtgacagagttaaagccagagtggttggtggag
atagcgccccactattaccagcttaaggacgttgaagacttgcattcgaagaaaatgcct
cgtgtagcaggccgtgtacaagaggacaaataa
DBGET
integrated database retrieval system
