Vigna unguiculata (cowpea): 114166673
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Entry
114166673 CDS
T06017
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03013
Nucleocytoplasmic transport
vun03015
mRNA surveillance pathway
vun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114166673
09122 Translation
03013 Nucleocytoplasmic transport
114166673
03015 mRNA surveillance pathway
114166673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114166673
03041 Spliceosome [BR:
vun03041
]
114166673
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114166673
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
114166673
Spliceosome [BR:
vun03041
]
Complex C
Other components
EJC/TREX
114166673
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
114166673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
114166673
NCBI-ProteinID:
XP_027907236
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All DBs
Position
10:complement(40451384..40456070)
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AA seq
425 aa
AA seq
DB search
MGELKDAETYEEELLDYEEEDEKAPDSAKPAESGKKGYVGIHSSGFRDFLLKPELLRAIV
DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCH
TRELAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALAR
DKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKK
FMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAA
ELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVIN
YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTS
TYMPN
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgggagaattgaaggacgccgagacttacgaggaagagctcctcgattacgaagaagaa
gatgagaaagctcccgattctgccaagcctgcagaatccggcaagaagggttatgttggc
atccatagttcgggttttcgagacttcctgttgaagccagagcttctgcgagccattgta
gattcaggatttgagcatccttcagaagtgcaacatgaatgcatccctcaagcaatctta
ggaatggatgttatttgtcaagcaaaatctgggatgggaaagactgctgtttttgttctt
tctacacttcagcaagttgatcctgttcctggtcaagttgcagctcttgttctttgccac
acaagagaactggcttatcagatttgccatgaatttgagagattcagtacatatcttcct
gatataaaggctgctgttttctatggtggcgtcaatatcaaggttcacaaagaattgctc
aagaatgaatgtcctcatattgttgttggaacaccagggaggattcttgctttggctaga
gataaggaccttggtttaaagaacgtgaggcatttcatacttgatgagtgtgacaagatg
cttgaatcacttgatatgagaagagacgtccaggagattttcaaattgactcctcatgat
aaacaagtgatgatgttttcagccacacttagtaaagagattcgacccgtttgcaagaaa
tttatgcaagatcctatggaaatctatgtggatgatgaggccaagttgacgcttcatggt
cttgtccagcactacatcaaattgcaagagtcagagaagaaccggaagttgaatgatctt
cttgatgctctggatttcaaccaagtagttatttttgtcaagagtgttagcagagcagca
gagttgaacaagttgcttgtggagtgtaacttcccatccatctgcatacattctgcaatg
tcacaggaagagagattgaaacgatacaaaggcttcaaggaagggaagcaaaggattctc
gtggcaactgacttagtagggaggggaattgacatagaacgtgttaatatagttattaat
tatgacatgcctgattctgccgatacttacttgcacagggtaggaagagcaggtagattt
ggcacgaaggggcttgctattacttttgtctcctccactgccgactctgaagttcttaat
caggtgcaatctaggtttgaagttgatattaaggagcttcctgaacaaattgacacttcg
acatacatgccaaattga
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