Vigna unguiculata (cowpea): 114166998
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Entry
114166998 CDS
T06017
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114166998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114166998
03036 Chromosome and associated proteins [BR:
vun03036
]
114166998
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114166998
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
114166998
mRNA degradation factors
5'-3' decay
Decapping complex
114166998
Chromosome and associated proteins [BR:
vun03036
]
Eukaryotic type
Gene silencing
piRNA pathway
114166998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
NA-iREase2
DUF4106
Motif
Other DBs
NCBI-GeneID:
114166998
NCBI-ProteinID:
XP_027907687
LinkDB
All DBs
Position
10:complement(33483933..33490044)
Genome browser
AA seq
496 aa
AA seq
DB search
MNHHHNNRARYPPGMGLGRGGFHPNVGHNPNLNQNPGLNQNQAFQPRPPYQQQPHYVQRH
LMQQPQQQQQWLRRDANAVDEVEKTVQSEAVDSSSQDWKARLKIPPADTRYKTEDVTATK
GNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPA
LEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQP
VHLLVGTPGRILDLAKKGVCIMKDCSMLVMDEADKLLSPEFQPSIEQLIHFLPPNRQILM
FSATFPVTVKDFKDRYLHKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQIN
QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT
RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGT
EIKQIPPQIDQAIYCR
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaccaccacaacaatagagcgaggtaccctcccggaatggggcttggccgagga
ggtttccatccgaacgtgggccacaaccccaacctcaaccagaacccaggcctgaaccag
aatcaggcgtttcagcctcggccaccgtaccagcaacaaccgcattacgtgcagaggcat
ttgatgcaacagccgcagcagcagcagcagtggctgagaagagacgccaatgccgtcgac
gaggtcgagaagaccgttcagtctgaagccgtggattcgagttcgcaagattggaaagca
agactcaagattccaccagctgatacacgctataagactgaggatgtaacagcaacaaaa
ggaaatgaatttgaggattactttttgaagcgtgagctgctcatgggaatatatgagaag
ggttttgaaaggccttctcccatccaagaagaaagcattccaattgctcttactggcagt
gacattcttgctagggctaaaaatggaactggcaaaactgctgcattttgcattcctgcg
ttggaaaaaattgaccaagataataatgttattcaagttgttatactggtcccaacccga
gaattggctttgcagacttctcaagtgtgtaaagaacttggaaaacacttgaaaatacaa
gttatggttacaacaggtggtaccagcctgaaagatgatataatgcgcttatatcaacca
gttcatttactagttggaactccaggaagaatattagatcttgctaagaaaggtgtttgt
attatgaaagattgctctatgcttgttatggatgaggctgataagctgctgtccccagag
ttccaaccttctatagagcagctgattcattttcttcctccaaaccgtcaaatcttgatg
ttttcagctacatttccggttactgtaaaggatttcaaagataggtatcttcataaacct
tatgtcatcaaccttatggatgagctaactctgaagggtattacacaatattatgcattt
gtggaagagaggcagaaagtccattgcctaaatactctattttctaagctgcaaataaac
cagtctatcattttctgcaactcggtgaatcgagtagaacttcttgccaagaaaatcaca
gaacttgggtattcatgtttctatattcatgcaaagatgttgcaagaccatcgtaacaga
gtgtttcatgacttccgcaatggtgcatgccgaaatcttgtttgtactgatctttttact
agaggaatagacattcaggcagttaatgttgttattaattttgattttcccaagaactca
gagacttatttgcacagggttggtcgttcagggaggtttgggcaccttgggttggcagtg
aatttgattacttacgaggatcgctttaatttatataggattgaacaagaacttggaact
gaaataaagcagattccaccgcaaattgatcaggcaatttattgccggtaa
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