Vigna unguiculata (cowpea): 114168941
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Entry
114168941 CDS
T06017
Name
(RefSeq) uncharacterized protein LOC114168941 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114168941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114168941
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
114168941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5-NGN
Raf1_HTH
Motif
Other DBs
NCBI-GeneID:
114168941
NCBI-ProteinID:
XP_027909727
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All DBs
Position
11:complement(39626300..39645528)
Genome browser
AA seq
1962 aa
AA seq
DB search
MADISSVDASLWWDSFTVLLTELENSSLSSDLPPNLAKKLKDNHAWFVDTLSRFKPPNQS
SKKALNSKTLKIGSHQLTVQPHLKDKALQISSILLLDEVQSYIFVERSIKHNDAVADSMA
PEFLHMMLIQYYKERQCLLKCIRWILMHAIHNGPVSEDNTMKEEARKLFHDGLESKLISF
FDNLLSCSYPEQMDVELFTLWAEETLIEDNLVLDILFLAYYDSFCTCSGEIWKKFGSLYK
GILAGDYNLGKLAITTETQQLSYHAKVQLLLILIETLNLENILQMVHDEVPYRKGVSTFS
MTDVQEMDALVSTFNAFEMNEAGPLVLAWAVFLYLLLTLLEKDENNELMEIDHISYVRQA
YEAGSLRYCLEILECDILKDYDGPMSGYRSVLRTFISAFIASYEINLQPDDGNPTLILDI
LCKIYRGEESLCIQFWDKESFIDGPIRSLLCNLESEFPFRTAELVQLLSSLGEGTWPAEC
VYNFLNRSVGISSLFEVYGDSQIVEAQQVVQVPGVQGFFIPAGTRGRVLRVVGENTALVR
WEYSSSGIFVLLLHLAQEMYLDNKDEVSFILDLLSRLVSFNTGICFAVMDISNSLQFDAV
GLVNEQVEKRVWVVEIICNLIKKLPLNSGGAALMSMGIKILSVMLICSPSNVAVATLNAN
LFDMTLQTPMFNVGSNGLSSGSWLLSSKLARMLSIDCEQNSNDCPLAISVLDFTIRLVET
GVEHDDLLALIIFSLQYVLVNHEYWKYKMKHIRWKITLKVLELMKKCISSTPNYGKMGEI
IRNVLFSDSSIHNTLFQVVCTTSHALEKLHISRIFDPMEIEGLQLAISSVLDILSVMLTK
LSKDTSLNFPVFLQAVFSCTTKPVPVVTSVLSLISYFQDPAIQYGAVRFISMLFAIADCI
QPFSYGISCFVPDNEIMDLRQSLSYILLEQSVSNEDLFVATVNLFTSAAHYQPSFIVAIF
APEENTKDHLSIGNAKLQKEETSPIHAVSRKPSLIDALVHYIERADDLIKSNPRILLCVL
NFMIALWQGAPLYANLLESLRRHGKFWEHLANAISNIASSGISSPTSVKEKDAFNLAYTF
HCQSSILGIMAYELFLQRKLFHAESTVKDAAESKEKEQNVTRTEKSKATNLHDLNGIWSS
LFNDSMLEKLIKSYTSYGYNNDIYNGAKVATSLFSVHVMMKLAVCDSGSLSVLLLQKIHE
ILAKLSIHPAFSELLSQYSQRGYSEGKELKKLILSDLYYHLQGELEGRKIGIGPFKELSQ
YLVESNFLGSYQHQFNKDAFTKNMFTKNVYLFDLAHLREDLRLDVWDCNNWRTSKEVAEV
MLRFLQDANSVMLLSSSKLSALKGLIAVLAVNHDPQGRATAGGRISDELTFTFMDNICQS
FLSNMEILSSVLDASEDILNFLACEVELIFQLTRTVSKSLSLDVSLLVLKCASSGLRVLG
SLKPAPSEVNVIMKLLLTLLLSVLQSNSLNAHSGVVTKDNSGEDLSKVSNATLGLLPILC
NCVMTSDHCMLSLSVMDLILRSFLTPRTWLPVLQNHLQLPVVMLKLHDRSSTSIPVIMKF
FLTLARVRGGAEMLYCSGFLSSVRVLFAESGEDLSSISENLGGSCEKFVIPQDIWGLGLA
VVTAIVKSLGDSSSGTAIVDSMIPYFFSEKARFIFNSLNAPDFPSDDRDKKRPRAQRAFI
SLATLKETEHTLMLMCELAKHWNSWIKAIRNVDRQLREKCIHLLAFISRGSQRLGELSSR
NAPLLCPPTLKEDFEISSKPSFVSSKNGWFALSPLGCVPKAKISSFSTASTNGQATESTD
LIPKTCFSDTVALQVYRIGFLLLKFLCLQTEGAAKRAEEVGFVDLAHFPELPMPEILHGL
QDQAIAITTELCQANKQKVSPEIQDVCNLLMQILEMALHLELCVLQICRIRPVLGRVEDF
SKEAKSLFSALEGHAFLKASRNSLKQMISCVYPGLLQAENFI
NT seq
5889 nt
NT seq
+upstream
nt +downstream
nt
atggccgatatcagttccgtcgatgcttctttgtggtgggactcattcacggtgctcctc
acagagcttgagaattcctctctgtcctcagatctcccaccgaacttggcgaagaagttg
aaggacaaccatgcctggttcgtggatacactctcgcgcttcaaaccgcccaatcagagt
tccaagaaagctctgaattcaaaaacgttgaaaattggatctcaccagctcactgttcag
cctcacctgaaagataaagcgttacagatcagttccatactgctactagacgaggtccaa
tcatacatttttgttgaaaggtccatcaaacataacgatgcagttgctgattccatggct
ccggagtttcttcacatgatgttaattcaatattacaaggagcgacagtgcttgctaaag
tgtatcaggtggattctcatgcatgctatacataatggtcctgtgtctgaagataatact
atgaaggaggaggcaagaaaattgtttcatgatggtcttgaaagtaaattaatatcattc
tttgacaatcttctgtcctgtagctacccagaacaaatggatgttgagctttttacactg
tgggctgaggagactctaatcgaagacaacttggttttagacatccttttcctggcatat
tatgactcattttgtacctgtagcggggaaatctggaagaagtttggttctctttacaag
gggatcttagctggtgattataacttgggaaagctagcaattactacagaaacacaacaa
ttgtcttatcatgctaaagttcagctgctgcttattttaattgaaacactgaacctggag
aatattcttcaaatggttcatgatgaagtaccatataggaaaggcgtgtctactttttcc
atgaccgatgtccaagagatggatgcactagtttctactttcaatgcttttgaaatgaat
gaagctggtcctctagttctagcttgggcagtatttctctatctgctcttgacacttctg
gaaaaagatgaaaacaatgagctaatggagattgatcacattagttatgtccgtcaagcc
tatgaagctggatccttgcgttattgtcttgaaattctggaatgtgacattttgaaagat
tatgatggcccaatgtctggatatcgcagtgttttgaggacattcatttctgcattcatt
gcatcttatgaaatcaaccttcagcctgatgatggtaacccgactctaatactggacatt
ctatgcaagatttatcgtggagaggaatcgttatgtattcagttttgggacaaggaaagt
tttattgatggtccaattcggtctcttctttgcaacctagagagtgagttccctttcagg
actgctgaacttgttcaactcctgtcatcccttggtgaaggaacttggcctgcggagtgt
gtgtataactttctaaataggtctgttggtatatcatctttgtttgaagtttatggtgat
tcacagatagttgaagcacaacaggtagtgcaagttcccggggttcaaggtttctttatt
ccggctggaactcgtggtcgtgtcttgagagttgttggagagaatactgcccttgtacga
tgggagtattcatcatctggaatattcgtattactcttacatttggcccaagaaatgtat
ttggataacaaggatgaagtttcttttatacttgatctgcttagtagattggtgtccttt
aatactggtatttgctttgctgtgatggacatcagcaactctttgcaatttgatgctgtt
ggtttggtgaatgagcaggttgaaaagagggtctgggtggttgaaataatttgcaattta
attaaaaagctgcctctgaattccggtggtgctgcacttatgtcaatgggtatcaagatt
ttatccgttatgttgatttgttctccatctaacgttgcagtggctactctaaatgcaaac
ctgtttgacatgactttgcagacacctatgttcaatgtaggcagtaatggcttatcaagc
gggtcatggttgctttcttctaaactggctaggatgctttcaattgactgtgagcaaaac
agtaatgactgccccttggcaatatcagtgctggacttcaccatacggcttgtagaaaca
ggagtagagcatgatgatctgctggcgttgatcatattctctttgcagtatgttctagtc
aatcacgaatattggaaatacaagatgaagcatattagatggaaaataacacttaaggtg
cttgaattgatgaaaaaatgcatttcatcaacgcctaattatggaaaaatgggtgagatc
atacgcaatgtgttattctctgattcttccatccataacacattattccaagttgtttgc
actacttcacatgctttggagaaattgcatataagccgcatctttgatccaatggaaatt
gaaggattacagcttgctataagttctgttttagacattctttccgtcatgttgaccaaa
ctttctaaggatacttcattgaactttccagtttttctccaagcagtgttctcttgcacg
accaaaccagtccccgttgtcacttctgttttgtccctgatttcatactttcaagatccg
gccatccaatatggagctgttaggtttatttcaatgttatttgccatagcagattgtatt
caaccattttcatatggaatctcatgcttcgttcctgataatgagatcatggatttgaga
caatctctgagctacatacttctggagcaatcagtgtcaaatgaagatctatttgttgct
accgtaaatctgtttacttctgctgcacattaccagccttctttcattgttgctatattt
gctcctgaggagaacaccaaagaccacttgagcattggtaatgcaaagctgcaaaaagaa
gaaacctctcctatacatgcagtttctagaaaaccaagtcttattgatgcacttgtgcac
tatattgaaagggcggatgatctgatcaagagcaatccccgcatactgctttgtgtactt
aacttcatgattgccttatggcaaggggctcccctatatgccaatctcttggagtcctta
agaaggcatggaaagttctgggaacacttagctaatgcaatctcaaatattgctagcagt
ggaatttcctcgcccacaagtgtgaaagaaaaagatgctttcaatctggcatatactttc
cattgtcagtcttcgatactaggaatcatggcatatgaactattcttgcagagaaagttg
tttcatgcagagtcaactgtgaaggatgcagcagaatctaaggagaaggagcaaaatgtc
acaagaactgagaaatctaaagccacgaatcttcatgatcttaatggaatctggtcttca
ttgttcaatgattccatgttagagaaactaataaagtcatacacttcttatggatataat
aatgatatatataatggtgcaaaggtcgccaccagtttattctctgttcatgtgatgatg
aaattagcagtttgcgactctggaagtttatctgtgttattgcttcagaagattcatgaa
attctggctaagttgagcattcatcctgctttttctgaattgctgtctcagtattcacaa
cgtggttacagtgaaggtaaggaactaaagaaattgatactcagtgacctctattatcat
ttgcaaggagagcttgaagggagaaaaattggtattggaccgttcaaagaattatctcag
tatcttgtcgaatcaaattttttgggatcctatcaacaccagttcaataaagatgctttt
acaaagaatatgtttacgaagaatgtatacttgtttgaccttgcccacttgcgagaagat
ttgagattagatgtgtgggattgtaacaattggagaacatccaaggaggttgcagaagtc
atgttacgtttcctgcaggatgcaaactcagtcatgttgctttcaagttcaaagctttct
gcattaaaaggactgatagctgttttggctgtcaaccatgatccacaagggagggctact
gctggagggaggatctcagatgaactcacattcactttcatggataatatatgccaatct
ttcctttctaacatggagatattatcatctgttcttgatgcctccgaggatattctcaat
tttcttgcatgtgaagtagaactaatcttccagttgactagaactgtcagtaaaagcctc
tcgctagatgtatccctacttgttttgaaatgtgctagttcgggtcttagagtgttgggt
tcacttaagccggcaccttctgaggttaatgtgatcatgaaacttttactcacattactg
ctttcagtattacagtccaactcccttaatgcacattcaggtgtagtaaccaaggacaat
tctggtgaggacttatcaaaggtttcaaatgcaaccctgggactactacccattctttgc
aactgcgttatgacttctgatcattgcatgctatccctgtcagtcatggatttaatactg
agaagcttcttgacacccaggacttggttacctgtcctgcagaatcatctccaattgcca
gtagttatgcttaaactccacgatagaagttcaacttctattccagtaataatgaagttc
tttttgacccttgcacgagttagaggaggtgctgaaatgctttattgttctggctttttg
tcatctgtgagagtgttatttgctgaatctggtgaggatttgtcgagcattagtgagaat
cttgggggctcatgcgagaagtttgtaataccccaggatatctgggggcttggattagct
gtggttacagctattgttaaatccttgggagacagttcttctggaactgctattgtggat
agtatgataccttactttttttcagagaaagctcgttttatctttaattctctaaatgcc
ccagactttccttctgatgatcgtgacaagaaaagacctcgagcacagagggcatttata
tctttagctactcttaaagaaacagaacatactttaatgctcatgtgtgagctagcaaaa
cattggaattcgtggattaaggcaataagaaatgtggatagacagcttagagagaagtgt
atccatcttttagccttcattagcaggggatctcaacgccttggtgaattgtcaagcagg
aatgccccacttttatgtccacctaccctgaaagaagattttgaaatttcctcaaaacct
tcctttgtgagtagcaaaaatggatggtttgctctttccccacttggatgtgtgccaaaa
gcaaagatctcttctttctcaaccgcttctaccaatggccaagcaactgagagcactgat
cttattccgaaaacgtgcttctctgatactgtagccctgcaggtatatagaataggattt
cttcttttaaagtttctctgtttacaaactgagggtgctgctaaaagggctgaggaggtt
gggtttgttgatcttgcacattttcctgagctgccaatgccagaaatcttgcatggatta
caggatcaagctattgccattactacggaactctgtcaagccaacaaacaaaaggtctct
ccagaaatacaggatgtttgcaacttactgatgcaaatacttgaaatggccttgcacttg
gaactttgtgttctacaaatttgtcgcataagacctgtattggggcgtgtggaggatttc
tcaaaggaagcaaaatctctgtttagtgcactggagggtcatgcttttctaaaagcatct
cgcaactctctgaaacagatgatatcgtgtgtctatcctggattgctgcaagcagagaat
ttcatatga
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