Vigna unguiculata (cowpea): 114169355
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Entry
114169355 CDS
T06017
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114169355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114169355
03012 Translation factors [BR:
vun03012
]
114169355
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114169355
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114169355
Translation factors [BR:
vun03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114169355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
ATPase
nSTAND3
AAA_16
T2SSE
Motif
Other DBs
NCBI-GeneID:
114169355
NCBI-ProteinID:
XP_027910293
LinkDB
All DBs
Position
11:complement(3818943..3837595)
Genome browser
AA seq
1153 aa
AA seq
DB search
MRNSKFAVSLLIARAKSLQLHHHTCQCVASSSPTSTPLFRFFPSSIRSANSVATTRLFSS
YYSLEQFSDDEYDGDFENQQVSSTVANVDEWKWKLSMLLRSEKDQEIVSRDKKDRRDYEQ
IANLAKRMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEYL
DRLQLNSAKTTDSLDDGNSTNQVKEIDIDENVDSFVDESVMEKVLQKRSLRMRNMQRTWQ
ESPEGRKMLEFRKSLPSFMEKQGLLQAIAHNQVIVVSGETGCGKTTQIPQYVLESQIESG
RGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGIL
LRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFS
NYFGGAPTFRIPGFTYPVRAHFLEDVLEITGYKLTSFNQIDDYGQEKLWKTQKQLAPRKR
KNQITSLVEDALSKSSFENYSSRARDSVASWAPDCIGFNLIEAVLCHICRKERPGAVLVF
MTGWEDISSLRDQLKAHPLLGDPNRILLLTCHGSMATSEQKLIFEKPPPNIRKVILATNM
AEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYH
LYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPEPRAVQNAIDF
LKMIGALDEKENLTNLGSFLSILPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDPFLL
PQDKRDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSSYEYCWRNFLSAQTLQAIH
SLRKQFSFILKDAGLLDTDASMINKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTM
DDGQVLLYANSVNARYQTIPYPWLLFGEKVKVSAVFIRDSTGVSDSILILFGGALSNGIQ
AGHLKMLDGYVDFFMDPNLADCYLKVKEELNKLIQKKLEDPSIDIHKEGKYLMLAVQELV
SGDQCEGRFVFGRESRKPRPSNDENKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTN
EFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNQPEDDKSPPDVTDNMLK
LLGKRRKSKRRHD
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaattcaaagtttgcagtgtctctgctcatagcacgtgccaagtcccttcaactt
caccaccacacgtgccaatgcgtcgcttcttcttctccaacctcaacgccactcttcagg
tttttcccttcttccatacgaagcgcgaattccgtcgccaccacccgcctcttctccagc
tactattccctcgaacagttctccgatgatgaatacgacggtgactttgagaaccagcag
gtatcgtctacggtggccaatgtggacgagtggaaatggaaactcagcatgctgttacgc
agcgaaaaggaccaggagattgtatcaagagataaaaaagataggagggactatgaacag
atagctaaccttgccaaaagaatggggctatacagtgagttgtttggaaaagtggtcgtt
gcaagcaaggtgcctcttcccaactaccgtccagatttggatgacaaacgtcctcaaaga
gaggtggtgattccactaagcttgcaaaggagggttgagggtttgctgcaggagtacctt
gatagacttcagttaaattctgcaaagacaactgacagcctggatgatgggaactccacc
aatcaagttaaagaaatagacattgacgaaaatgttgattcttttgtggatgaatctgtc
atggaaaaggttctccagaagaggagtttgaggatgcgcaatatgcaaagaacttggcag
gaatcacctgaaggcaggaagatgctggaattccggaagtctctaccatcatttatggaa
aagcaaggtttacttcaagctatagcacacaatcaggtgatagttgtatctggagagact
ggctgtggtaaaaccactcaaattcctcaatatgtattagaatcacagatagagtctggc
cgtggagcattttgtaacattatttgcacgcagcctcgaaggatatctgccatggcagtt
tctgagagagtgtcagctgagcgtggagagcctcttggtgaaacagtgggcttcaaagtt
cgattagaaggaatgaaagggaaaaacacccatctgctattttgtaccagtggtatatta
cttagaaggttgctgagtgatcgtaatctgaatggtataacccatgtttttgtggatgaa
attcatgaaagaggcatgaatgaagacttcttgttgattgtgctaaaggatctgcttcca
cggcgtagggatttaaggttggttttaatgagtgccaccttgaatgctgagctgttttca
aattattttggaggtgctcctacatttcgaattccgggtttcacctatcctgtcagagct
cactttttagaagatgtgttggaaataactggatacaagttgacttccttcaaccaaatt
gatgattatggtcaagagaaactgtggaaaacacaaaagcaattagcaccacggaagagg
aaaaatcagatcacttctcttgttgaggatgctctttcaaaatcaagctttgagaactac
agttccagggcacgtgattcagtggcatcttgggcacctgactgcatagggtttaatctc
attgaggctgttctatgccatatatgtaggaaggaacgtccaggtgctgtcttagtgttt
atgaccggatgggaggacataagttctttaagagatcaacttaaagcacatcctctttta
ggagatcccaataggattctacttctaacgtgtcatggttcaatggcaacatcagaacag
aaactcatatttgagaaaccacctccaaacataaggaaagtaatacttgctacaaatatg
gctgaggcaagtataacaatcaatgacatagtttttgtggtcgattgtggaaaagcaaaa
gagaccacgtatgatgctttgaataacacaccttgtcttctaccttcttggatatcacaa
gcatctgcacgtcagagaaggggtagggctggtcgtgtgcagccaggagaatgctaccac
ctttaccccaaatgtgtttatgaagccttttctgaatatcaacttcctgaactactgaga
acacctttgaactctctttgcttgcaaataaaaagtttgcaggttgagagcattggagag
ttcttatcagcagctttacaggcaccggagccacgagctgttcaaaatgctattgatttt
ctcaagatgattggagcactagatgaaaaagaaaatcttacaaatctcgggagttttctc
tctatacttcctgtagatcccaagctcggcaaaatgttaataatgggagctatatttcga
tgctttgatcctgttcttacaattgtagctggccttagtgtcagggatcctttccttttg
ccacaagacaagagggatttagctgggacagcaaagtctaggttttctgccaaagattac
agtgatcatatggctcttgttcgagcatatgaaggatggaaagatgcagaaagagaagga
tcgtcttatgaatactgctggagaaattttctctctgcccaaactcttcaggctattcat
tcacttcggaagcagtttagcttcatcttgaaagatgctggcttgctagatacagatgca
agcatgattaacaaattgagtcacaatcagtctcttgtgcgtgcagtcatttgttctgga
ctctttcctggcatagcatcagtggtgcacagggagacatccatgtcatttaaaacaatg
gatgatggccaggttttattatatgctaattctgtgaatgcacggtaccagaccattcca
tacccatggttgctttttggtgagaaagttaaggtcagtgctgttttcatccgtgattcc
actggtgtatctgattcaatactgatcctttttggtggtgctctaagtaatgggatacag
gctgggcatctaaaaatgttagatggatatgttgacttcttcatggatcctaatttagct
gactgctatttgaaggttaaggaagagctcaataagcttatccagaagaagcttgaagat
cctagcattgacattcacaaggaagggaagtacttgatgcttgcggttcaggagctggtt
tcaggggatcaatgcgaaggaagatttgtgtttggccgtgaaagccggaagccaaggccc
tctaatgatgaaaataaattcacaaaagatgggacaaatcccaagagcttgctgcaaaca
ctgttgatgcgagcaggacactccccaccaaaatacaaaaccaaacatctcaagacgaat
gagtttagggcactggtggagttcaagggaatgcaatttgttggcaaaccgaagagaaac
aagcaacttgcagaaagggatgctgctatagaggcattggcttggttgactcatacttct
gacaataatcagcctgaagatgataagtctcctcccgatgtcactgataacatgctaaaa
ctcctcgggaagcggagaaaatcaaaacgacgccatgattga
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integrated database retrieval system
