KEGG   Vigna unguiculata (cowpea): 114169692
Entry
114169692         CDS       T06017                                 
Name
(RefSeq) flowering time control protein FY
  KO
K15542  polyadenylation factor subunit 2
Organism
vun  Vigna unguiculata (cowpea)
Pathway
vun03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:vun00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    114169692
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vun03019]
    114169692
Messenger RNA biogenesis [BR:vun03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     114169692
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_WDR5 WD40 WD40_CDC20-Fz WD40_Prp19 WDR55 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_Gbeta EIF3I Beta-prop_EML Beta-prop_WDR36-Utp21_2nd Beta-prop_IFT140_1st Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd Beta-prop_Aladin Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_IFT122_1st eIF2A Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Beta-prop_SPT8 Beta-prop_WDR75_1st NBCH_WD40 WD40_RFWD3 Beta-prop_Vps41 WD40_like Beta-prop_HPS5 WD_LRWD1 Beta-prop_DCAF12 Tricorn_2nd Beta-prop_RIG_1st PROPPIN B-prop_COPA_B_2nd Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 114169692
NCBI-ProteinID: XP_027910756
LinkDB
Position
11:1093285..1107304
AA seq 715 aa
MMYNDPQHQQHQYQQQQPPPHFHHQPPGQEFHRGPPPSSQAPPVMRQGSASSTNLAPEFH
HPGPGGPPPPHYDVHSDGHGAKRIRKLTQRKAVDYTSTVVRYMQVRMWQRDSRDRTVLQP
TPAAAIDMLPAVGYPDNPSTSFAAKFVHTSLNKNRCPINRVLWTPTGRRLITGSQTGEFT
LWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKE
SVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEECSLTGHGWDVKSVDWHPTKSLLVSGG
KDNLVKLWDAKTGKELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES
FRGHRKDVTALAWHPFHEEYFVSGSYDGSIFHWLVGHETPQIEISNAHDNNVWDLAWHPI
GYLLCSGSSDHTTKFWCRNRPGDTLRDRFNPGMQGYADPNPVAGRVGGNFPMAEGPTTPG
PFAPGLTRNEGTIPGVGVAMPLSIPSLDMPQGEQKQPHPVSMGAPPLPPGPHPSLLNANQ
QQPYQQNPQQMPPQHQHQGLPQQMGPLPMPPNMPQLQHPSHSPMVPHQHLPRPPPQMPIG
LPGSIPGISSVPTSHPMPMPGPMGMQGAMNQMGTPMPQGPYVGMNQMHSGSLPTSGGPPL
GGFPGNMPNMQGPSSGNYPQGASFNRPQGGQMPLMQGYNPYQSGNQTGMPPNAQP
NT seq 2148 nt   +upstreamnt  +downstreamnt
atgatgtataatgatccgcagcaccagcagcaccagtaccagcagcagcagccgccgccg
catttccaccaccagccgccgggtcaggagttccaccgcggacctccgccgtcatcacag
gcgcctccggtgatgcggcaaggctccgcttcgtcgacgaacctggctcccgagtttcac
caccccggccccggaggaccccctcctcctcattacgatgttcacagtgatggccatggt
gctaaaagaatacgaaagcttactcaaaggaaagcagttgattatacaagcacagtcgtg
cgttatatgcaggttcgtatgtggcagcgggattcaagggataggacagtattgcagcct
accccagcagcagcaattgatatgttgccagcagttggctatccagacaacccatccaca
agctttgctgctaaatttgttcatacatctctaaataaaaatcgttgccccattaatcgc
gttctttggactccaacaggccggcgacttattactggctcacagactggggaattcact
ctttggaatggacaatcttttaattttgaaatgattcttcaggctcatgatcaagcaatc
aggtccatggtctggagtcacaatgacaactggatggtctctggtgatgatggaggcgca
ataaagtattggcagaacaacatgaacaatgttaaagccaacaaatctgctcataaagaa
tcagtccgtgacttaagtttctgtaggacagatttgaagttctgttcatgctctgatgat
accaccgttaaggtttgggattttgcacgttgtcaggaagagtgctcattaaccggccat
ggttgggatgtgaagagtgttgactggcatcctacaaaatcccttttggtatcaggcggg
aaagacaatcttgtgaaactttgggatgctaagacagggaaagagctttgctcatttcat
gggcacaaaaatactgtgctatgtgtcaagtggaaccaaaatggcaactgggtgttaaca
gcttcaaaggatcaaataataaagctttatgacattagagccatgaaggagcttgagtca
ttccgtggacatcgcaaagatgttactgctttggcatggcatccattccatgaggagtac
tttgtgagtgggagttatgatggttccatcttccattggcttgttgggcatgaaactccc
caaattgaaatttctaatgcccatgataataacgtgtgggatcttgcatggcatcctatt
ggataccttctgtgcagtggcagcagtgatcatacaacaaagttttggtgcagaaatagg
ccaggagacacccttcgtgatagatttaaccctggcatgcaaggatatgctgatccaaat
cctgttgctggtcgggtgggtggtaattttccaatggccgaaggcccaacaactccagga
ccatttgcccctgggttaactcgaaacgagggcaccattccaggtgttggagttgcaatg
cccttatctattccttctcttgacatgcctcaaggggagcagaagcagccccatcctgtt
tcaatgggtgctccacctcttcccccaggtccacatccctctcttcttaatgccaaccaa
cagcaaccataccaacagaatcctcagcagatgccgccacaacatcaacaccagggtcta
ccacagcagatgggtcctttgccaatgcctccaaacatgccacaattacagcatccttca
cattcacccatggtccctcaccagcatttacctcgccctcctccacaaatgcctattggc
ctgccaggatctataccagggatttcatcagtacctacttcacatccgatgccaatgcct
ggccctatggggatgcaaggggcaatgaatcagatgggtactccaatgccacaaggtcct
tatgtgggcatgaatcaaatgcattcaggatccttgcctacgagtggagggccaccactt
ggtggttttccaggcaacatgcctaatatgcaaggcccatcaagtggcaattatcctcaa
ggtgcttcatttaacagacctcaaggtggccaaatgcctttgatgcaagggtataatcct
taccagtctggtaatcaaactgggatgcctccaaacgcacaaccctag

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