Vigna unguiculata (cowpea): 114170138
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Entry
114170138 CDS
T06017
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
vun
Vigna unguiculata (cowpea)
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vun03009
]
114170138
Ribosome biogenesis [BR:
vun03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
114170138
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
NBCH_WD40
EIF3I
Beta-prop_EML
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Beta-prop_CAF1B_HIR1
Beta-prop_NWD2_C
Beta-prop_SPT8
Beta-prop_SCAP
Apocytochr_F_C
Beta-prop_VPS8
Ge1_WD40
WD40_RFWD3
Motif
Other DBs
NCBI-GeneID:
114170138
NCBI-ProteinID:
XP_027911423
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Position
11:6804500..6809206
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AA seq
445 aa
AA seq
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MSSSSSNELILTSSPDGPIMVYETVSRTAVTRFSSSRSPCRGLTTVGRRLLAASHVSSDT
GAGSINIYNWHGSSVFRNFPVPEPIAPLTATPDGAFLFGGGISGSVLSISGSSGDVIRSI
VVHSSPVSSLHLSDDGSLLVSGSEDGTVVVLPSFKIVVSGSFEENVEDLILHKWKAHSDS
VTALKSVTGTLVSCSLDRTCKFWNLGNHGVLMQSVALPCSVSGVALDSSGSTFYAGGGDG
FVYNGSVEACEVGKWGQSQSGSIVSLALVNEERNVVSAAEDGSVWMWDVEKGEVVMVFGD
ELITLSDMIVIKGNGGGFGVGKGHGVDGEGSGSFTASGLCDEEILKTLNQMTALGEVKDV
VLQDRKKAIEMLESVIEIPFKLAVNVEKLKLDHKVVKESKRESFRQNICMLVLSADMEEL
NDALLDIFSPITDLLVVGHPSQSEL
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcttcctccaatgaactcatcctcactagctcccctgacgggccaatcatg
gtctacgagacggttagccgcaccgccgtgacacggttctccagcagccggtcaccgtgc
cgcggccttaccacggtgggccggagattgttggcagcctcacacgtgtcatcagacacg
ggtgcaggctccatcaacatctacaactggcacggttcttctgtgtttcgtaacttcccc
gtgccagaacccattgcccctctcactgcgacacccgacggagcatttctcttcggcggt
ggaatctcaggcagcgttctatctatctcaggttcttccggtgatgtcatcagatcaatc
gttgttcactcaagtccagtttccagtctccatctgagcgacgatgggtcactccttgtt
tcaggtagcgaagatggaacagttgttgttctccctagcttcaagatcgttgtttcgggt
tcctttgaggagaatgtggaagacttgatcttgcacaagtggaaggcacattctgattcc
gtcactgctttgaagtccgtgacgggtactttggtttcttgctcattagaccgaacgtgc
aagttttggaatctgggaaaccatggggtccttatgcagagtgtggcattgccgtgttcc
gtttctggggttgccctagattcatcggggtcaacgttttacgccggtggtggtgatggg
tttgtttataatgggtcggtggaggcttgtgaggtgggaaaatgggggcaaagccaaagt
gggtcgattgtgtcgctggctttggtgaacgaagagaggaatgtggtgtctgctgcagaa
gatgggagtgtgtggatgtgggatgttgagaaaggagaagttgtgatggtttttggggat
gaattgataacccttagcgacatgattgtgatcaagggaaatggtggagggtttggagtt
ggaaagggacatggtgtcgatggggagggtagtgggtccttcactgcttctgggttgtgt
gatgaagagattcttaagactctgaatcaaatgacagcccttggggaggtcaaggatgtt
gtgttacaagacaggaaaaaggccattgaaatgttggaatctgtgattgaaatcccattc
aagcttgccgtaaatgttgagaagctaaagcttgatcataaggttgtgaaagagagcaag
agagagagctttagacagaatatctgcatgttggtgttgagtgccgatatggaggagctt
aatgatgcattgcttgatattttttcgccaattactgatctcctcgtcgtagggcatcca
tcccaatcagagttgtag
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