Vigna unguiculata (cowpea): 114173362
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Entry
114173362 CDS
T06017
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03020
RNA polymerase
vun03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
114173362
09124 Replication and repair
03420 Nucleotide excision repair
114173362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vun03021
]
114173362
03400 DNA repair and recombination proteins [BR:
vun03400
]
114173362
Enzymes [BR:
vun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
114173362
Transcription machinery [BR:
vun03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
114173362
DNA repair and recombination proteins [BR:
vun03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
114173362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
MIF4G_like_2
DUF5938
Motif
Other DBs
NCBI-GeneID:
114173362
NCBI-ProteinID:
XP_027913499
LinkDB
All DBs
Position
2:complement(27113645..27122059)
Genome browser
AA seq
1841 aa
AA seq
DB search
MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI
DRKLKCDTCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK
FKLALRIRNPKNRLKKILDACKNKGKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI
EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDS
LLGCRKITKRDTFIPKDVFMNILMWWEDFDGKVPTPAILKPEPLWTGKQVFNLIIPKPIN
LIRYSSWHSENERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQHAFSIGIGDTIADASTMETINQTISAAKEKVKQLIRDAQEKKL
EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK
LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ
LATEIAPSGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP
GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLN
PEVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV
ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIADINKVFIKNTKTQKFDESEGFKP
NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP
YHDTVMSPSYLLSPNLRLSPTSDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPASPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYS
PSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPFNSGVSPDY
SPSSPQYSPSTGYSPSQPGYSPSSTSQYTPQTSDKDDRGTR
NT seq
5526 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgatttccgttctctccggcggaggtcgccaaagtccggatggttcagttc
ggaatactcagtcccgatgagatcaggcaaatgtctgtggtgcaaattgagcacggtgag
acgacggagagagggaagccgaaggttggaggattgagtgaccctcgacttggaactatt
gacagaaagctcaagtgtgacacttgcacggcgagtatggctgaatgtcctggtcacttt
ggacacttggagcttgccaagccaatgtttcacattgggtttctaaagaccgtgttgact
ataatgcgttgtgtgtgcttcaactgctctaaaattctagctgacgagaatgatcacaaa
tttaagctagctttaaggatcaggaatcccaagaacaggctgaaaaagattctggatgct
tgcaaaaacaaaggcaagtgtgaagggggagatgaaattgatattcctggacaagatacc
gatgagccagttaaaaagagtcgcggtggctgtggtgctcagcaaccaaagattacgatt
gaggggatgaaaatgattgcagagtacaaagctcaaaggaaaaaaagtgatgatcaagaa
cagcttcctgaacctgtagagaggaaacaaaccctttctgcagaaagggttcttggtgtt
ctgaaaaggataagcgacgaggactgtcagttgttgggcttgaaccctaagtatgcccgt
cctgactggatgattttacaagttcttccaattcctcctccacctgtgagaccttctgtg
atgatggacacatcctctaggagtgaggatgatttaactcatcagctggctatgatcatc
aggcacaatgagaatcttaagagacaggagaggaacggatctcctgcacatattatttct
gagtttgctcaattattgcagttccacatagcaacatattttgataatgagttgcctgga
ctgccaagggctactcaaagatccggaaggcctatcaaatcaatatgtagcaggctcaaa
gcaaaagaaggacggattagaggtaacttgatgggtaaaagagttgatttttctgctcga
acagtcattacacctgatccaacaatcaacattgatcaattgggagtgccatggagtatt
gctttgaatctaacataccctgagaccgtgactccatacaacattgaaaggttgaaggaa
cttgtggagtatggaccccatcctccgcctggaaaaactggtgccaagtacatcattcgt
gatgatggacaaaggctcgatctcagatatttaaagaaaagtagtgatcaccatttggag
cttggctacaaggttgagcgtcatttgaatgatggagactttgttctcttcaatcgtcag
cctagtcttcacaaaatgtccatcatggggcatagaatcaaaatcatgccatattctaca
ttccggcttaacttgtccgtaacttcaccatataatgccgattttgatggggatgaaatg
aatatgcatgttcctcagtcttttgaaaccagagctgaggtgttggagcttatgatggtg
cctaaatgcattgtgtcaccacagtcaaacaggccagtgatgggaattgtccaagattca
cttttaggatgcagaaaaatcactaagagagatacttttatcccaaaggatgttttcatg
aacatattgatgtggtgggaagattttgatgggaaagttcctactcctgcaatattgaag
ccagaaccattatggacagggaaacaagttttcaatctcatcattcctaagcctataaat
ctaattagatattctagttggcacagtgagaatgaaaggggatccataacccctggggat
accatggtcagaattgaaaaaggcgaactacttactggaacactttgcaaaaagacactt
ggaacatctactggaagtctcattcacgtgatttgggaagaggttggtcctgatgcagct
cggaaatttcttgggcatactcagtggcttgtaaactactggcttttgcagcatgctttt
agcattggaattggtgatacaattgctgatgcgtccactatggaaaccataaatcagact
atatcagcagctaaggagaaagtgaaacaacttatcagggatgcccaagagaaaaagttg
gaggctgagcctggtcggacaatgatggattcatttgaaaacagagtgaatcagacacta
aacagagctcgtgatgatgctggaaatagtgctcaaaaaagtttatctgagagcaacaat
ctgaaagcaatggtcacagctggttccaaaggaagttttattaacatatctcaaatgact
gcttgtgtgggccaacagaacgttgagggtaaacgaattccatatgggttcatagatagg
acattgcctcatttcacaaaagatgattatgggcctgaaagtcgtggctttgtggagaac
tcatatctgcgagggttgacccctcaagagttcttttttcatgccatgggtggtagggaa
ggtcttattgatactgccgtgaagacctctgaaactgggtacatccagaggcgactggta
aaggctatggaggacatcatggttaaatatgatgggactgttagaaattctttgggagac
gttatacagtttctttacggggaagatggtatggacgccgtttggattgaaacacagaag
ctggattcccttaaaatgaaaaagacagaatttgatagggtgtttaggtatgaatttgat
gatgaaaactggaagcctacctacatgcttgaagagcctgtagaagacttaaaaaccatc
cgagaatttcgtaatgtgtttgaggccgaggttcagaaacttgaagctgatagatatcaa
cttgcaactgagatagcccctagtggtgacagttctcttccactacctgttaacttgaag
aggcttatctggaatgctcagaagacatttaaggttgatttccgaaggccttctgatatg
catccaatggaaattgtggaagccattgataagctgcaggagcggcttaaggttgttcct
ggtgaagatcttttaagtcaagaagctcaaaagaatgctactctcctgtttaacattctt
cttcgcagcactttcgcaagtaaaagggtcttggaggaatacaggctctctcgtgaggca
tttgagtgggtagtgggagaaatagaatcaaggttcttgcagtcgctcgtagcctctgga
gaaatgattggttgtgtagctgcccaatcaattggtgaacctgctactcagatgactctt
aacactttccattatgctggtgtcagcgcaaagaatgttactcttggtgttcctaggtta
agggaaatcattaatgtggcaaagagaattaaaacaccttctctgtctgtgtacttgaat
cctgaggttggtaagactaaagagagagccaagagtgtgcagtgtgctctagaatatacc
actctaaggagtgtgacacaagctacagaggtgtggtatgatccggatccgatgagtaca
ataattgaagaggatgttgatttcgtgaagtcctactatgaaatgcccgatgaagaagtt
gcccttgagaaaatctcaccttggttgcttcgcatagagctgaatcgtgaaatgatggtg
gataagaagttgagtatggctgacattgcagagaagattaaccttgaatttgacgatgat
ttgacttgtatatttaatgatgataatgcggaaaaacttatacttcgtatccgtattatg
aatgatgaggcacccaagggtgagattcaggatgaatccgctgaagatgatgttttctta
aagaagatagaaagcaacatgctgactgaaatgaccctgcgcggtatcgctgacatcaac
aaagtttttataaagaatactaaaactcagaagtttgatgagagtgaaggttttaagcct
aatgaggaatggatgcttgatactgaaggtgtcaaccttctggctgtgatgtgccatgaa
gatgttgatgcgaccaggaccacaagcaaccacttaattgaagttattgaagttcttggt
attgaggcagttcggcgagctcttttggatgaattgcgtgtcgtaatttcgtttgatggt
tcctatgtcaattacaggcatttggctattctttgtgatacaatgacttatcgggggcat
ctgatggccattacccgtcatggtatcaaccggaatgatactgggccaatgatgagatgc
tcatttgaagagacagttgatattctgcttgatgctgcagtatatgcggagactgattac
ttaaggggtgtcactgaaaacattatgctaggtcagcttgcccccattggcacaggtgaa
tgtgcattgtatcttaatgatgagatgctgaagaatgccattgagctccaactgcctagt
tatatggatggtcttgattttggcatgactcctgctcgctctccaatatctggaactccg
tatcatgacaccgtgatgtctcctagttatttgttgagtccaaatttgcgtctgtctcct
acgtcggatgcccagttttcaccttatgttggtgggatggcattttctcccacctcatct
cccgggtacagtccatcatctccaggctatagtccatcatcgcctgggtacagccccaca
tcacctgggtacagtcctacatctccgggctacagtcccacatcaccaggttacagtccg
acctctcccacgtatagccctagttctccaggatatagtcctacaagtccggcttattcg
ccaaccagtccatcctactctcccacatcacccagctatagcccaacatcacccagctac
agtcctacatcacccagctacagccccacatcacccagttatagcccaacttctcccagc
tacagcccgacttcacctgcatacagtcccacttcacctgcctatagccccacttcacct
gcatatagtcccacttcaccttcctacagccctacgtcaccttcatatagtcctacctca
ccttcatacagccccacttcaccctcttacagccctacctccccatcatatagccctgca
tcccctgcttacagccccacttcacctggatacagccctacgtcaccctcatatagccca
acatccccatcgtatagtcctacttccccaagttacaatccccagtcagcaaagtacagt
ccttcattggcatattctccaagcagtccaagattgtctccatcaagtccatatagtccc
acatccccaaactacagccccacgtccccatcatattcaccgacatcaccgtcttattca
ccatcaagcccaacatacagtcccagcagcccatttaattctggcgtgagcccagactat
agcccaagttcaccccaatatagtcccagtactggttactcaccaagtcaacctggttac
tcaccatcgtcaaccagccagtacactcctcaaactagtgacaaggatgatagaggcact
cgctga
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integrated database retrieval system
