Vigna unguiculata (cowpea): 114173675
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Entry
114173675 CDS
T06017
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114173675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114173675
03012 Translation factors [BR:
vun03012
]
114173675
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114173675
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114173675
Translation factors [BR:
vun03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114173675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
ATPase
NPHP3_N
Dicer_dimer
AAA_11
Rad17
T2SSE
Motif
Other DBs
NCBI-GeneID:
114173675
NCBI-ProteinID:
XP_027913993
LinkDB
All DBs
Position
2:complement(14608142..14642380)
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AA seq
1108 aa
AA seq
DB search
MSPRIPFIAMDSSLPVHVDNDADKGVSCDADKGVSCDAEKGTSSLPSAFPNEDWKQKLNM
LLNDQSKQELVSREKKDRRDFQQIEILASKMGLYSHMYAKVVVVSKVPLPNYRYDLDDKR
PLREVNLPTALLRQVDGYLQEYLTHKSRRKESFPDLWCATPRDSSGTNEGLFRPPQSLSC
SRAVVEKILCQSSQMHDQQRAWQESPDGRKILEFRSSLPAYKEKEAILSAISRTQVLIIS
GETGCGKTTQVPQFILESEIELVRGAVCNIICTQPRRIAAISVSERVAYERGEKLGETVG
YKVRLEGMQGRDTHLLFCTTGILLRRLLDDKKLKGITHIIVDEIHERGMNEDFLLVVLKD
LLACRPELKLILMSATLDAELFSSYFNNASTMKIPGFTYPVRTLFLEDILEMSGYRLTPD
NQIDDYGQERIWKMNKQLPGKRKSQLSSAVEDVVRVADFNYYSPQTRESLSCWNPDCIGF
NLIQYILCNICEHERPGAILVFMIGWDDINALKEKLLTHPVLSDPNRVLLLMCHSSMDSL
EQRLIFEEPEDGVRKIVLATNIAETSITINDIVFVIDCGKAKESSYDALNNTPCLLPTWI
SKVSVQQRRGRAGRVQPGECYHLYPRCVYDSFTKHQLPEILRMPLQSLCLQIKSLKLGSI
SEFLSRALQSPEILAVQNAIEYLKTIGALDENENLTILGRHLVVLPMEPKLGKMLIFGVI
FNCLDPILTIVAGLSVRDPFLTPSDKKDLAQAAKSQFSHDYSDHLAIVRAYDNWKDAEID
NAGHEYCWKNFLSPQSMKVIDALRVEFLSLLKDIGLVDRNMTSCNAWSYDMYLIRAAICY
GLYPGICSVVHKDKSFSLKTMDDGKVFLHSNSVNARETRIPYPWLVFNEKIKVNSVFLRD
STAVPDSVVLLFGGSISKGDTDGHLKMSGGYLEFFLKPAVADMYQSIRKDLDKLIHSKLQ
FPQMSIHTFHELLFAIRLLICNDKCEGKFVFSCQLLKPSMMAMQQALVSRTDSGPGGDNT
KGHLQTLLTRAGYGAPFYTTTQLKNNQFRATVEFNGVQIMGQPYNNKKNAEKDAAAEALQ
WLMGRMQTGNEDISHMTMVLKKSKTDHN
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcctcgcattccatttatcgccatggattcttctcttcccgttcatgttgacaat
gatgctgacaaaggggttagttgcgatgctgacaaaggggttagttgcgatgctgagaaa
gggacttcttcacttccaagtgctttccccaacgaggactggaagcagaagttaaacatg
cttttgaatgatcagagtaagcaagagttggtctccagggagaaaaaagatcggcgtgat
tttcagcaaatagagattttggccagcaaaatggggttgtacagtcatatgtatgcgaag
gttgttgttgtcagcaaagtgcctcttccaaactacagatatgatttggacgataaacgc
cccctcagggaggtgaacctaccaactgctttgttaaggcaagttgatggatatcttcaa
gaatacctaacccacaagtcaagaaggaaggaaagctttcccgatttgtggtgtgcaaca
ccacgcgacagcagtggtacaaatgaagggctctttcggccacctcagtcactatcatgc
agcagggctgtagtggagaaaattctctgtcagagttcacaaatgcatgatcagcaaaga
gcttggcaggaatctccagatggaagaaaaattctggaatttcgtagcagtctacctgct
tataaagagaaggaagcaatattatcagccatatcaaggactcaggtacttatcatatca
ggtgaaacaggttgtggaaagacaacacaagttccacagtttatcctagaatctgagata
gaattagttcgtggagctgtgtgtaatatcatttgcacacaaccaagacgcattgcagca
atttctgtttctgaaagagttgcctatgaaagaggagagaaattgggtgaaactgttgga
tataaagttagactggagggcatgcaagggagagatacccatcttctcttctgcaccaca
ggcatcttattaagaagattactagatgataaaaaattaaaaggcataactcatattatt
gttgatgaaattcatgagcgtggaatgaatgaagactttttgcttgttgtccttaaagat
cttctagcttgcagaccagaactgaaactgattttaatgagtgctacccttgatgctgag
ctcttctcttcatattttaataatgcttcaactatgaagataccgggttttacatatcct
gtcagaactctatttttggaggatattctggaaatgtcgggctacagattgactcctgac
aatcaaattgatgattatggtcaagaaaggatttggaaaatgaacaaacagttgccagga
aagaggaaaagccaattatcttctgctgtggaggatgtggtaagagttgctgatttcaat
tattacagtccacaaacaagggagtctttgtcttgttggaatcctgactgtattggtttt
aacctcatacaatatatattgtgcaatatatgtgagcatgaaagaccaggtgccattttg
gttttcatgattggatgggatgatataaatgctctgaaggagaagctcctaacacatcct
gtcttgagtgatccaaaccgagttttgttgctaatgtgccatagctcaatggacagtttg
gagcagaggttaatctttgaagaacctgaagatggagtacggaaaatagtgctagcaaca
aatattgctgaaacgagtatcacaatcaatgatattgtttttgttatcgactgtgggaag
gcaaaagaatcatcatatgatgcactgaataacacaccttgtttgcttcctacttggatt
tctaaggtttcagttcaacaaagaagaggaagagctggtcgtgttcaaccaggagaatgt
tatcatctgtatcctagatgtgtatatgattctttcacaaagcatcaattacctgaaatt
ttgaggatgccgttgcaatctctctgtctgcaaatcaaaagtttgaaactaggaagtata
tctgagtttttgtctagggctttacagtctccagagatacttgcggttcaaaatgcaatt
gaatatttaaaaacaattggagctctggatgagaatgagaatctgactattctagggcgc
catttggtagtgcttcctatggaacctaaacttggcaagatgctgatatttggtgttata
ttcaattgtctggatcctatattaacaattgttgccggccttagtgttagagatcctttt
ctaacaccttcggataaaaaagatcttgcacaggcagcaaagtctcagttttcccatgat
tacagtgaccatctggccattgtgagggcctatgataactggaaggatgccgaaatagac
aatgctggacatgaatactgctggaaaaattttctttctccacaatccatgaaagttatt
gacgctcttagagtggaattcttatccctgctcaaagatattggattagttgatagaaac
atgaccagttgcaatgcatggagctatgatatgtatctcattcgagcagctatttgctat
ggcctatatcctggaatctgctcggttgtgcataaggataagtcattttctctgaaaaca
atggatgatggcaaagtgttcctacattcgaattcagtgaatgctcgcgaaactagaatt
ccatatccatggctagtttttaatgagaagataaaagtgaactctgtatttctccgtgac
tcaacagctgtgcctgattctgtggtacttctttttggtgggagcatctcaaaaggagat
accgatggtcacttgaaaatgtcgggaggatatttggagtttttcttgaaacctgctgtt
gctgacatgtaccagagtataaggaaagatcttgacaaacttattcacagtaaattacag
ttcccgcagatgagcatacacacattccatgagctcttatttgctatacggttgctgatt
tgcaatgacaaatgtgaaggcaaattcgtgtttagttgccagctccttaaaccatcaatg
atggcaatgcaacaagcattggtttcaagaacagacagtggacccgggggtgataatact
aaaggccaccttcaaacattgctgacacgagctggatatggtgcacccttctacaccacc
acgcaattgaagaataatcagtttcgtgctacagttgagtttaatggagtgcagataatg
ggccaaccatataacaacaagaagaatgcagaaaaggatgctgcggctgaggcactgcag
tggcttatgggtagaatgcaaacagggaatgaggatatcagtcacatgacaatggtgctg
aagaaaagtaagacagatcataattga
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integrated database retrieval system
