Vigna unguiculata (cowpea): 114176619
Help
Entry
114176619 CDS
T06017
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03018
RNA degradation
vun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114176619
09123 Folding, sorting and degradation
03018 RNA degradation
114176619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114176619
03041 Spliceosome [BR:
vun03041
]
114176619
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114176619
mRNA degradation factors
5'-3' decay
Lsm complex
114176619
Spliceosome [BR:
vun03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
114176619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF1952
Motif
Other DBs
NCBI-GeneID:
114176619
NCBI-ProteinID:
XP_027917517
LinkDB
All DBs
Position
1:36928719..36931472
Genome browser
AA seq
178 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEIVNHLVWGVGGEEAEKKVPVDANQKELGVVLMMVVPRELEEVEARL
ALAESLVETEGEVEADFYWWRKLLQMDQLTTFRGHLCSSLMCIGCNFTARVSLCILGF
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctctcccttctcaaaactgcccaaggccacccaatgttggtggaactgaaa
aatggagagacttataacggccatttggttaattgcgatacatggatgaacatccatctc
cgagaagtcatttgcacgtctaaagatggagatagattttggaggatgcctgaatgctac
atacgaggcaatacaataaagtaccttcgagttcctgatgagatcgtaaaccacctggtg
tggggcgtgggaggggaagaggcagagaagaaggtgccggtggacgccaaccaaaaggaa
ttgggcgtggttttgatgatggtagtaccaagggagctggaggaggtcgaggcaaggctg
gccctagcggaaagcctggtggaaacagagggcgaggtagaggctgatttttactggtgg
cgtaaactacttcagatggaccagttgactactttcagagggcatttgtgctcgtcttta
atgtgtatcggttgcaacttcactgcccgtgtttccttgtgcattcttggattttag
DBGET
integrated database retrieval system
