Vigna unguiculata (cowpea): 114176819
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Entry
114176819 CDS
T06017
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114176819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vun03041
]
114176819
03009 Ribosome biogenesis [BR:
vun03009
]
114176819
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114176819
Spliceosome [BR:
vun03041
]
Complex A
U1 snRNP components
U1 related factors
114176819
Complex B
114176819
Ribosome biogenesis [BR:
vun03009
]
Eukaryotic type
Pre-60S particles
Helicases
114176819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HAD_Pex22
AAA_33
Motif
Other DBs
NCBI-GeneID:
114176819
NCBI-ProteinID:
XP_027917789
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All DBs
Position
3:51548023..51553457
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AA seq
603 aa
AA seq
DB search
MNPYDNRYSDPASFHARRSDIVRSIPPPSLGGRGDAVPYGAFRSNGFGSAPVAPIPPFVP
PPGGFSVGRGSGRVGNGHLSDRKHDIGRSGGGRGRGGGRGGVHSFRGSRRGGRHDGGSSR
DDLNNITLPKQSFKNLVPFEKNFYVECPAVRAMSEQEIMHYRASREITVQGHDVPKPVRM
FHEANFPDYCLEVIANLGFAEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALVH
VNAQPRLAHGDGPIVLVLAPTRELAIQIQEEALKFGSRTSIRSTCIYGGAPKGPQIRELR
RGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQT
LLWSATWPREVETLARQFLRNPYKVIIGSPNLKANQSINQVVEVVTDMEKYNRLIRLLKE
VMDGSRILIFMETKKGCDQVTRQMRIDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTA
TDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLI
KILQDAGQDVSPALSAMVRSAGSGQFGSGGSFRTRGRGGYGNRGMTSGSNAIPLGSKRPW
HYL
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaacccctacgacaatagatactctgatcccgcttcttttcacgctcgtcgcagcgat
atcgttagatctattcctccgccgtctttaggcggtcgcggcgacgcggttccctatggc
gcctttaggtccaacgggttcggatccgcacctgttgctccgattccaccatttgtaccc
cctcctgggggttttagcgtaggacgaggtagtggtagagtgggcaatggtcacctgagt
gatagaaaacacgacataggtcgtagtggcggtggaagaggtcgtggcggcggtagaggc
ggggttcacagttttaggggctccaggagaggaggtagacacgatggtggatcttctagg
gacgatttgaacaatattacacttccgaagcagagttttaagaatttggtcccttttgag
aagaatttttacgttgagtgccctgcggtgagagccatgtctgagcaagaaattatgcat
taccgtgcttctagagagatcaccgtgcaaggccatgatgtgccgaaacctgtacggatg
tttcacgaggcgaattttcctgattattgccttgaggtcattgccaatctgggttttgca
gagcccactccaattcaggctcagggttggcccatggcaatgaagggtagggatttaatt
ggcatagctgagactggctcgggtaaaactttggcgtatttgcttcctgctttagtgcac
gtcaacgctcaacctcgattggcacatggtgacggtcccattgtcttagtattagcaccg
acaagagagctagctattcaaattcaagaagaggctctgaaatttgggtctcgaacaagt
attagaagtacgtgcatctatggtggtgcaccaaagggcccccaaattcgcgagcttaga
agaggcgttgagattgttattgctacacctggtcgtctaatagatatgttggaagctcag
cacacaaaccttcaaagagtgacttaccttgtcttagacgaagctgatcgaatgctggac
atgggttttgaacctcagatacggaaaattgtaggccagattcgacctgataggcaaaca
ttattatggagtgctacatggccaagggaggttgaaactctggcaaggcagtttctgcgc
aatccgtacaaggtaattatcgggtcaccaaacctgaaggcaaatcaatctatcaatcaa
gttgttgaagttgtaacagacatggagaaatataatagattaatcagactgctgaaagaa
gtgatggatgggagccgaattctaatttttatggagacaaaaaagggatgtgatcaagtt
acgagacaaatgagaattgatgggtggccagcactatccatccatggtgataaaaaccag
gctgaaagggattgggtcttggctgaatttaagagtggcagaagtccaataatgactgcc
actgatgttgctgcacggggtcttgatgtgaaggacattaaatgtgtgatcaattatgac
tttccatcaagcctggaagattatgtacacagaattggtcgaactggtcgtgcaggagcc
aaaggaactgcatacacattttttacacatgccaatgccaagtttgccagggatctgatc
aagattttacaagatgctggtcaggatgtgagtcctgcattgtctgcaatggttcgatca
gctggttctggtcaatttggatcagggggaagttttcgcacaagaggacgtggaggctat
gggaatcgaggtatgacatcaggttccaatgccattcctctaggttcgaagaggccttgg
cattatctatag
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